http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?action=history&feed=atom&title=GFtbox 2026-05-02T20:28:45Z Revision history for this page on the wiki MediaWiki 1.43.8 http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=6239&oldid=prev 2013-05-22T16:30:19Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:30, 22 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l17">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* members of the BanghamLab</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">(</ins>* members of the <ins style="font-weight: bold; text-decoration: none;">biological computing </ins>BanghamLab<ins style="font-weight: bold; text-decoration: none;">)</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ol&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ol&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Susanna Sauret-Güeto, Katharina Schiessl, Andrew Bangham*, Robert Sablowski, Enrico Coen (2013). JAGGED Controls Arabidopsis Petal Growth and Shape by Interacting with a Divergent Polarity Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550, [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001550 Sauret-Güeto et al 2013]&lt;/small&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Susanna Sauret-Güeto, Katharina Schiessl, Andrew Bangham*, Robert Sablowski, Enrico Coen (2013). JAGGED Controls Arabidopsis Petal Growth and Shape by Interacting with a Divergent Polarity Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550, [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001550 Sauret-Güeto et al 2013]&lt;/small&gt;</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=6238&oldid=prev 2013-05-22T16:29:38Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:29, 22 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l17">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* members of the BanghamLab</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ol&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;ol&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Susanna Sauret-Güeto, Katharina Schiessl, Andrew Bangham*, Robert Sablowski, Enrico Coen (2013). JAGGED Controls Arabidopsis Petal Growth and Shape by Interacting with a Divergent Polarity Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550, [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001550 Sauret-Güeto et al 2013]&lt;/small&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Susanna Sauret-Güeto, Katharina Schiessl, Andrew Bangham*, Robert Sablowski, Enrico Coen (2013). JAGGED Controls Arabidopsis Petal Growth and Shape by Interacting with a Divergent Polarity Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550, [http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001550 Sauret-Güeto et al 2013]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway, Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 "Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity",[http://www.sciencemag.org/content/335/6072/1092.abstract ''' Science''':  2 March 2012: 1092-1096.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille<ins style="font-weight: bold; text-decoration: none;">*</ins>, Richard Kennaway<ins style="font-weight: bold; text-decoration: none;">*</ins>, Sandra Bensmihen, Jerome Avondo<ins style="font-weight: bold; text-decoration: none;">*</ins>, Grant M. Calder, Paul Southam<ins style="font-weight: bold; text-decoration: none;">*</ins>, Sarah Robinson, Andrew Bangham<ins style="font-weight: bold; text-decoration: none;">*</ins>, Enrico Coen, 2012 "Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity",[http://www.sciencemag.org/content/335/6072/1092.abstract ''' Science''':  2 March 2012: 1092-1096.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Kennaway<ins style="font-weight: bold; text-decoration: none;">* </ins>R, Coen E, Green A, Bangham<ins style="font-weight: bold; text-decoration: none;">* </ins>A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Amelia Green, Richard Kennaway<ins style="font-weight: bold; text-decoration: none;">*</ins>, Andrew Hanna, Andrew Bangham<ins style="font-weight: bold; text-decoration: none;">*</ins>, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;li&gt;&lt;small&gt; Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham<ins style="font-weight: bold; text-decoration: none;">*</ins>, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ol&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;/ol&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=6237&oldid=prev 2013-05-22T16:27:57Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:27, 22 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l17">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;"># Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;ol&gt;</ins></div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam</del>, <del style="font-weight: bold; text-decoration: none;">Sarah Robinson</del>, Andrew Bangham, Enrico Coen<del style="font-weight: bold; text-decoration: none;">, 2012 "Generation of Leaf Shape through Early Patterns of </del>Growth and <del style="font-weight: bold; text-decoration: none;">Tissue </del>Polarity<del style="font-weight: bold; text-decoration: none;">"</del>,[http://www.<del style="font-weight: bold; text-decoration: none;">sciencemag</del>.org/<del style="font-weight: bold; text-decoration: none;">content</del>/<del style="font-weight: bold; text-decoration: none;">335/6072/1092</del>.<del style="font-weight: bold; text-decoration: none;">abstract ''' Science''':  2 March 2012: 1092</del>-<del style="font-weight: bold; text-decoration: none;">1096.</del>]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;li&gt;</ins>&lt;small&gt; <ins style="font-weight: bold; text-decoration: none;">Susanna Sauret-Güeto</ins>, <ins style="font-weight: bold; text-decoration: none;">Katharina Schiessl</ins>, Andrew Bangham<ins style="font-weight: bold; text-decoration: none;">*, Robert Sablowski</ins>, Enrico Coen <ins style="font-weight: bold; text-decoration: none;">(2013). JAGGED Controls Arabidopsis Petal </ins>Growth and <ins style="font-weight: bold; text-decoration: none;">Shape by Interacting with a Divergent </ins>Polarity <ins style="font-weight: bold; text-decoration: none;">Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550</ins>, [http://www.<ins style="font-weight: bold; text-decoration: none;">plosbiology</ins>.org/<ins style="font-weight: bold; text-decoration: none;">article</ins>/<ins style="font-weight: bold; text-decoration: none;">info%3Adoi%2F10.1371%2Fjournal.pbio</ins>.<ins style="font-weight: bold; text-decoration: none;">1001550 Sauret</ins>-<ins style="font-weight: bold; text-decoration: none;">Güeto et al 2013</ins>]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">#</del>&lt;small&gt; <del style="font-weight: bold; text-decoration: none;">Susanna Sauret-Güeto</del>, <del style="font-weight: bold; text-decoration: none;">Katharina Schiessl</del>, Andrew Bangham<del style="font-weight: bold; text-decoration: none;">*, Robert Sablowski</del>, Enrico Coen <del style="font-weight: bold; text-decoration: none;">(2013). JAGGED Controls Arabidopsis Petal </del>Growth and <del style="font-weight: bold; text-decoration: none;">Shape by Interacting with a Divergent </del>Polarity <del style="font-weight: bold; text-decoration: none;">Field PLOS Biology, 11 (4) : 10.1371/journal.pbio.1001550</del>,[http://<del style="font-weight: bold; text-decoration: none;">cmpdartsvr1</del>.<del style="font-weight: bold; text-decoration: none;">cmp</del>.<del style="font-weight: bold; text-decoration: none;">uea.ac.uk</del>/<del style="font-weight: bold; text-decoration: none;">downloads</del>/<del style="font-weight: bold; text-decoration: none;">software</del>/<del style="font-weight: bold; text-decoration: none;">OpenSourceDownload_PLoS_SauretGueto_2013</del>/<del style="font-weight: bold; text-decoration: none;">GPT_Petal_PLoS_20130502</del>.<del style="font-weight: bold; text-decoration: none;">zip &lt;span style="color: Gray"&gt;</del>'''''<del style="font-weight: bold; text-decoration: none;">Petals</del>'<del style="font-weight: bold; text-decoration: none;">'''' Sauret</del>-<del style="font-weight: bold; text-decoration: none;">Güeto et al 2013&lt;/span&gt;</del>]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;li&gt;</ins>&lt;small&gt; <ins style="font-weight: bold; text-decoration: none;">Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway, Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam</ins>, <ins style="font-weight: bold; text-decoration: none;">Sarah Robinson</ins>, Andrew Bangham, Enrico Coen<ins style="font-weight: bold; text-decoration: none;">, 2012 "Generation of Leaf Shape through Early Patterns of </ins>Growth and <ins style="font-weight: bold; text-decoration: none;">Tissue </ins>Polarity<ins style="font-weight: bold; text-decoration: none;">"</ins>,[http://<ins style="font-weight: bold; text-decoration: none;">www</ins>.<ins style="font-weight: bold; text-decoration: none;">sciencemag</ins>.<ins style="font-weight: bold; text-decoration: none;">org</ins>/<ins style="font-weight: bold; text-decoration: none;">content</ins>/<ins style="font-weight: bold; text-decoration: none;">335</ins>/<ins style="font-weight: bold; text-decoration: none;">6072</ins>/<ins style="font-weight: bold; text-decoration: none;">1092</ins>.<ins style="font-weight: bold; text-decoration: none;">abstract </ins>''' <ins style="font-weight: bold; text-decoration: none;">Science</ins>'''<ins style="font-weight: bold; text-decoration: none;">:  2 March 2012: 1092</ins>-<ins style="font-weight: bold; text-decoration: none;">1096.</ins>]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">#</del>&lt;small&gt; Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;li&gt;</ins>&lt;small&gt; Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">#</del>&lt;small&gt; Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 <del style="font-weight: bold; text-decoration: none;">PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;li&gt;</ins>&lt;small&gt; Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">#&lt;small&gt; Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 </del>PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td colspan="2" class="diff-side-added"></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;li&gt;&lt;small&gt; Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;/ol&gt;</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].&#039;&#039;&#039; It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. &#039;&#039;GFtbox&#039;&#039; comprises around 1000 subroutines and 90,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].&#039;&#039;&#039; It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. &#039;&#039;GFtbox&#039;&#039; comprises around 1000 subroutines and 90,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=6236&oldid=prev 2013-05-22T16:17:05Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:17, 22 May 2013</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l17">Line 17:</td> <td colspan="2" class="diff-lineno">Line 17:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">1. </del>Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<ins style="font-weight: bold; text-decoration: none;"># </ins>Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 &quot;Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity&quot;,[http://www.sciencemag.org/content/335/6072/1092.abstract &#039;&#039;&#039; Science&#039;&#039;&#039;:  2 March 2012: 1092-1096.]&lt;/small&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 &quot;Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity&quot;,[http://www.sciencemag.org/content/335/6072/1092.abstract &#039;&#039;&#039; Science&#039;&#039;&#039;:  2 March 2012: 1092-1096.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">2. Kennaway R</del>, <del style="font-weight: bold; text-decoration: none;">Coen E</del>, <del style="font-weight: bold; text-decoration: none;">Green A</del>, <del style="font-weight: bold; text-decoration: none;">Bangham A</del>, <del style="font-weight: bold; text-decoration: none;">2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue </del>Polarity <del style="font-weight: bold; text-decoration: none;">and Growth</del>. <del style="font-weight: bold; text-decoration: none;">  </del>[http://<del style="font-weight: bold; text-decoration: none;">www</del>.<del style="font-weight: bold; text-decoration: none;">ploscompbiol</del>.<del style="font-weight: bold; text-decoration: none;">org</del>/<del style="font-weight: bold; text-decoration: none;">article</del>/<del style="font-weight: bold; text-decoration: none;">info:doi</del>/<del style="font-weight: bold; text-decoration: none;">10.1371</del>/<del style="font-weight: bold; text-decoration: none;">journal</del>.<del style="font-weight: bold; text-decoration: none;">pcbi.1002071 PLoS Comput Biol 7(6)</del>: <del style="font-weight: bold; text-decoration: none;">e1002071.</del>]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#</ins>&lt;small&gt; <ins style="font-weight: bold; text-decoration: none;">Susanna Sauret-Güeto</ins>, <ins style="font-weight: bold; text-decoration: none;">Katharina Schiessl</ins>, <ins style="font-weight: bold; text-decoration: none;">Andrew Bangham*</ins>, <ins style="font-weight: bold; text-decoration: none;">Robert Sablowski</ins>, <ins style="font-weight: bold; text-decoration: none;">Enrico Coen (2013). JAGGED Controls Arabidopsis Petal Growth and Shape by Interacting with a Divergent </ins>Polarity <ins style="font-weight: bold; text-decoration: none;">Field PLOS Biology, 11 (4) : 10.1371/journal.pbio</ins>.<ins style="font-weight: bold; text-decoration: none;">1001550,</ins>[http://<ins style="font-weight: bold; text-decoration: none;">cmpdartsvr1.cmp.uea</ins>.<ins style="font-weight: bold; text-decoration: none;">ac</ins>.<ins style="font-weight: bold; text-decoration: none;">uk</ins>/<ins style="font-weight: bold; text-decoration: none;">downloads</ins>/<ins style="font-weight: bold; text-decoration: none;">software</ins>/<ins style="font-weight: bold; text-decoration: none;">OpenSourceDownload_PLoS_SauretGueto_2013</ins>/<ins style="font-weight: bold; text-decoration: none;">GPT_Petal_PLoS_20130502</ins>.<ins style="font-weight: bold; text-decoration: none;">zip &lt;span style="color</ins>: <ins style="font-weight: bold; text-decoration: none;">Gray"&gt;'''''Petals''''' Sauret-Güeto et al 2013&lt;/span&gt;</ins>]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">3. Amelia Green</del>, <del style="font-weight: bold; text-decoration: none;">Richard Kennaway</del>, <del style="font-weight: bold; text-decoration: none;">Andrew Hanna</del>, <del style="font-weight: bold; text-decoration: none;">Andrew </del>Bangham, <del style="font-weight: bold; text-decoration: none;">Enrico Coen, "Genetic Control </del>of <del style="font-weight: bold; text-decoration: none;">Organ Shape and </del>Tissue Polarity<del style="font-weight: bold; text-decoration: none;">", </del>[http://<del style="font-weight: bold; text-decoration: none;">dx</del>.<del style="font-weight: bold; text-decoration: none;">doi</del>.org/10.1371/journal.<del style="font-weight: bold; text-decoration: none;">pbio</del>.<del style="font-weight: bold; text-decoration: none;">1000537 </del>PLoS Biol<del style="font-weight: bold; text-decoration: none;">, 2010, vol.8, no.11</del>.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#</ins>&lt;small&gt; <ins style="font-weight: bold; text-decoration: none;">Kennaway R</ins>, <ins style="font-weight: bold; text-decoration: none;">Coen E</ins>, <ins style="font-weight: bold; text-decoration: none;">Green A</ins>, Bangham <ins style="font-weight: bold; text-decoration: none;">A</ins>, <ins style="font-weight: bold; text-decoration: none;">2011 Generation </ins>of <ins style="font-weight: bold; text-decoration: none;">Diverse Biological Forms through Combinatorial Interactions between </ins>Tissue Polarity <ins style="font-weight: bold; text-decoration: none;">and Growth.  </ins>[http://<ins style="font-weight: bold; text-decoration: none;">www</ins>.<ins style="font-weight: bold; text-decoration: none;">ploscompbiol</ins>.org<ins style="font-weight: bold; text-decoration: none;">/article/info:doi</ins>/10.1371/journal.<ins style="font-weight: bold; text-decoration: none;">pcbi</ins>.<ins style="font-weight: bold; text-decoration: none;">1002071 </ins>PLoS <ins style="font-weight: bold; text-decoration: none;">Comput </ins>Biol <ins style="font-weight: bold; text-decoration: none;">7(6): e1002071</ins>.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">4</del>. Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#</ins>&lt;small&gt; <ins style="font-weight: bold; text-decoration: none;">Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx</ins>.<ins style="font-weight: bold; text-decoration: none;">doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#&lt;small&gt; </ins>Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4754&oldid=prev 2012-03-16T08:26:55Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:26, 16 March 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18">Line 18:</td> <td colspan="2" class="diff-lineno">Line 18:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;&lt;br&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;1. Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;1. Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 "Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity",''' Science''': <del style="font-weight: bold; text-decoration: none;">''in press''</del>&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 "Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity",<ins style="font-weight: bold; text-decoration: none;">[http://www.sciencemag.org/content/335/6072/1092.abstract </ins>''' Science''': <ins style="font-weight: bold; text-decoration: none;"> 2 March 2012: 1092-1096.]</ins>&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;2. Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;2. Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4760&oldid=prev 2012-03-16T08:21:51Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 09:21, 16 March 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l27">Line 27:</td> <td colspan="2" class="diff-lineno">Line 27:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''''GFtbox'' is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].''' It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. ''GFtbox'' comprises around 1000 subroutines and <del style="font-weight: bold; text-decoration: none;">50</del>,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''''GFtbox'' is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].''' It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. ''GFtbox'' comprises around 1000 subroutines and <ins style="font-weight: bold; text-decoration: none;">90</ins>,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     if (Steps(m)==0) &amp;&amp; m.globalDynamicProps.doinit  % Initialisation code.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>     if (Steps(m)==0) &amp;&amp; m.globalDynamicProps.doinit  % Initialisation code.</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4752&oldid=prev 2012-02-10T06:57:15Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:57, 10 February 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3">Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What is &#039;&#039;GFtbox&#039;&#039;, how does it work and where is it?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What is &#039;&#039;GFtbox&#039;&#039;, how does it work and where is it?&lt;/span&gt;==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GPT_thumbnail2.png|thumb|left|100px]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GPT_thumbnail2.png|thumb|left|100px]]</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''We wish to understand''' how patterns of gene activity in biological organs influence the developing shape. Our suggestion is that genes may regulate growth direction independently of growth rate. We formalised our ideas in the Growing Polarised Tissue Framework (reference 1, below). The icon is based on Fig. 4 of reference <del style="font-weight: bold; text-decoration: none;">1</del>, and shows an asymmetrical spur that has grown under the influence of a polariser gradient, indicated by the arrows.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''We wish to understand''' how patterns of gene activity in biological organs influence the developing shape. Our suggestion is that genes may regulate growth direction independently of growth rate. We formalised our ideas in the Growing Polarised Tissue Framework (reference 1, below). The icon is based on Fig. 4 of reference <ins style="font-weight: bold; text-decoration: none;">2</ins>, and shows an asymmetrical spur that has grown under the influence of a polariser gradient, indicated by the arrows.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;Intuition is not&#039;&#039;&#039; a good guide to the behaviour of tissue growing under the influence of patterns of growth. Patterns interact with each other and the continuous sheet of tissue to produce complex shapes. It is therefore necessary to translate intuition into a mathematical model whose behaviour can be calculated. &#039;&#039;GFtbox&#039;&#039; is a package for creating and simulating such models.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;Intuition is not&#039;&#039;&#039; a good guide to the behaviour of tissue growing under the influence of patterns of growth. Patterns interact with each other and the continuous sheet of tissue to produce complex shapes. It is therefore necessary to translate intuition into a mathematical model whose behaviour can be calculated. &#039;&#039;GFtbox&#039;&#039; is a package for creating and simulating such models.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l9">Line 9:</td> <td colspan="2" class="diff-lineno">Line 9:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;A &#039;&#039;GFtbox&#039;&#039; project comprises two parts&#039;&#039;&#039;, the Mesh and the Interaction function. The Mesh is a finite element model of the tissue, together with patterns of gene activity, tissue identity, and biochemical properties. The Interaction function specifies the local interactions of these properties.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;A &#039;&#039;GFtbox&#039;&#039; project comprises two parts&#039;&#039;&#039;, the Mesh and the Interaction function. The Mesh is a finite element model of the tissue, together with patterns of gene activity, tissue identity, and biochemical properties. The Interaction function specifies the local interactions of these properties.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>'''Does ''GFtbox'' work correctly?''' Validation is an important question to be asked of all modelling software. There are various simple models for which analytical solutions can be obtained and compared with the computations performed by GFtbox. An extensive range of such validation tests can be found in Supplemental Text 1 of reference <del style="font-weight: bold; text-decoration: none;">1</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>'''Does ''GFtbox'' work correctly?''' Validation is an important question to be asked of all modelling software. There are various simple models for which analytical solutions can be obtained and compared with the computations performed by GFtbox. An extensive range of such validation tests can be found in Supplemental Text 1 of reference <ins style="font-weight: bold; text-decoration: none;">2</ins>.</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>We have used the '''GPT-framework''' to understand the development of the Snapdragon flower (reference <del style="font-weight: bold; text-decoration: none;">2 </del>below). '''Using ''GFtbox''''' we started with a crown shaped sheet of tissue (the canvas), laid out observed or hypothesised patterns of regulatory activity and then grew the canvas in 3D. Patterning can continue during growth and the final shape was compared quantitatively with its biological counterpart -- so '''testing the hypotheses''' made in the model (reference <del style="font-weight: bold; text-decoration: none;">3 </del>below).</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>We have used the '''GPT-framework''' to understand the development of the Snapdragon flower (reference <ins style="font-weight: bold; text-decoration: none;">3 </ins>below). '''Using ''GFtbox''''' we started with a crown shaped sheet of tissue (the canvas), laid out observed or hypothesised patterns of regulatory activity and then grew the canvas in 3D. Patterning can continue during growth and the final shape was compared quantitatively with its biological counterpart -- so '''testing the hypotheses''' made in the model (reference <ins style="font-weight: bold; text-decoration: none;">4 </ins>below).</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;To work with &#039;&#039;GFtbox&#039;&#039;&#039;&#039;&#039; is to practice thinking quantitatively about the relationship between genes, growth and form.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;To work with &#039;&#039;GFtbox&#039;&#039;&#039;&#039;&#039; is to practice thinking quantitatively about the relationship between genes, growth and form.</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4804&oldid=prev 2012-02-10T06:56:15Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:56, 10 February 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l16">Line 16:</td> <td colspan="2" class="diff-lineno">Line 16:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;big&gt;References&lt;/big<ins style="font-weight: bold; text-decoration: none;">&gt;&lt;br&gt;</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;small&gt;1. Erika E. Kuchen, Samantha Fox, Pierre Barbier de Reuille, Richard Kennaway,</ins></div></td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Sandra Bensmihen, Jerome Avondo, Grant M. Calder, Paul Southam, Sarah Robinson, Andrew Bangham, Enrico Coen, 2012 "Generation of Leaf Shape through Early Patterns of Growth and Tissue Polarity",''' Science''': ''in press''&lt;/small</ins>&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">1</del>. Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<ins style="font-weight: bold; text-decoration: none;">2</ins>. Kennaway R, Coen E, Green A, Bangham A, 2011 Generation of Diverse Biological Forms through Combinatorial Interactions between Tissue Polarity and Growth.  [http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002071 PLoS Comput Biol 7(6): e1002071.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">2</del>. Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<ins style="font-weight: bold; text-decoration: none;">3</ins>. Amelia Green, Richard Kennaway, Andrew Hanna, Andrew Bangham, Enrico Coen, "Genetic Control of Organ Shape and Tissue Polarity", [http://dx.doi.org/10.1371/journal.pbio.1000537 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<del style="font-weight: bold; text-decoration: none;">3</del>. Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;<ins style="font-weight: bold; text-decoration: none;">4</ins>. Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, "Quantitative Control of Organ Shape by Combinatorial Gene Activity", [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==&lt;span style=&quot;color:Navy;&quot;&gt;What does &#039;&#039;GFtbox&#039;&#039; require?&lt;/span&gt;==</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4753&oldid=prev 2012-02-10T06:51:20Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:51, 10 February 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Software#GFtbox|Back to BanghamLab software]]&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Software#GFtbox|Back to BanghamLab software]]&lt;br&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[GFtbox Tutorial pages|&#039;&#039;Tutorials&#039;&#039;]] and [https://sourceforge.net/p/gftbox/ &#039;&#039;Download&#039;&#039;]&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[GFtbox Tutorial pages|&#039;&#039;Tutorials&#039;&#039;]] and [https://sourceforge.net/p/gftbox/ &#039;&#039;Download&#039;&#039;]&lt;br&gt;</div></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==What is ''GFtbox'', how does it work and where is it?==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==<ins style="font-weight: bold; text-decoration: none;">&lt;span style="color:Navy;"&gt;</ins>What is ''GFtbox'', how does it work and where is it?<ins style="font-weight: bold; text-decoration: none;">&lt;/span&gt;</ins>==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GPT_thumbnail2.png|thumb|left|100px]]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:GPT_thumbnail2.png|thumb|left|100px]]</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;We wish to understand&#039;&#039;&#039; how patterns of gene activity in biological organs influence the developing shape. Our suggestion is that genes may regulate growth direction independently of growth rate. We formalised our ideas in the Growing Polarised Tissue Framework (reference 1, below). The icon is based on Fig. 4 of reference 1, and shows an asymmetrical spur that has grown under the influence of a polariser gradient, indicated by the arrows.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;We wish to understand&#039;&#039;&#039; how patterns of gene activity in biological organs influence the developing shape. Our suggestion is that genes may regulate growth direction independently of growth rate. We formalised our ideas in the Growing Polarised Tissue Framework (reference 1, below). The icon is based on Fig. 4 of reference 1, and shows an asymmetrical spur that has grown under the influence of a polariser gradient, indicated by the arrows.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l24">Line 24:</td> <td colspan="2" class="diff-lineno">Line 24:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;3. Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, &quot;Quantitative Control of Organ Shape by Combinatorial Gene Activity&quot;, [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;small&gt;3. Min-Long Cui, Lucy Copsey, Amelia Green, Andrew Bangham, Enrico Coen, &quot;Quantitative Control of Organ Shape by Combinatorial Gene Activity&quot;, [http://dx.doi.org/10.1371/journal.pbio.1000538 PLoS Biol, 2010, vol.8, no.11.]&lt;/small&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==What does ''GFtbox'' require?==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==<ins style="font-weight: bold; text-decoration: none;">&lt;span style="color:Navy;"&gt;</ins>What does ''GFtbox'' require?<ins style="font-weight: bold; text-decoration: none;">&lt;/span&gt;</ins>==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].&#039;&#039;&#039; It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. &#039;&#039;GFtbox&#039;&#039; comprises around 1000 subroutines and 50,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; is written in [http://en.wikipedia.org/wiki/MATLAB  Matlab].&#039;&#039;&#039; It does not require any extra Mathworks toolboxes, nor any separately compiled modules. Matlab is available as a [http://www.mathworks.com/products/matlab/tryit.html 30 day free trial] and as a [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]. &#039;&#039;GFtbox&#039;&#039; comprises around 1000 subroutines and 50,000 lines of code. It allows individual models, the part that a user writes, to be very compact -- 10 to 100 lines of Matlab code. For example, the model shown in Fig. 1 has a mesh that was created using the graphical user interface, and this code in its interaction function:</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l57">Line 57:</td> <td colspan="2" class="diff-lineno">Line 57:</td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;Matlab runs on&#039;&#039;&#039; Windows, Mac and Linux. The key Matlab numerical algorithms are documented and generally visible and there is a large user-base providing lots of web based help.  </div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&#039;&#039;&#039;Matlab runs on&#039;&#039;&#039; Windows, Mac and Linux. The key Matlab numerical algorithms are documented and generally visible and there is a large user-base providing lots of web based help.  </div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==How to start using ''GFtbox''==</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==<ins style="font-weight: bold; text-decoration: none;">&lt;span style="color:Navy;"&gt;</ins>How to start using ''GFtbox''<ins style="font-weight: bold; text-decoration: none;">&lt;/span&gt;</ins>==</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://sourceforge.net/p/gftbox/home/ &#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; can be freely downloaded&#039;&#039;&#039; from sourceforge]. After downloading, start Matlab, cd to the GFtbox directory, and give the command &lt;code&gt;GFtbox&lt;/code&gt;. GFtbox will start and present you with its graphic interface.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[http://sourceforge.net/p/gftbox/home/ &#039;&#039;&#039;&#039;&#039;GFtbox&#039;&#039; can be freely downloaded&#039;&#039;&#039; from sourceforge]. After downloading, start Matlab, cd to the GFtbox directory, and give the command &lt;code&gt;GFtbox&lt;/code&gt;. GFtbox will start and present you with its graphic interface.</div></td></tr> </table>

AndrewBangham http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox&diff=4759&oldid=prev 2012-02-09T15:15:52Z

<p></p> <table style="background-color: #fff; color: #202122;" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 16:15, 9 February 2012</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Software#GFtbox|Back to BanghamLab software]]&lt;br&gt;</ins></div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[GFtbox Tutorial pages|&#039;&#039;Tutorials&#039;&#039;]] and [https://sourceforge.net/p/gftbox/ &#039;&#039;Download&#039;&#039;]&lt;br&gt;</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[GFtbox Tutorial pages|&#039;&#039;Tutorials&#039;&#039;]] and [https://sourceforge.net/p/gftbox/ &#039;&#039;Download&#039;&#039;]&lt;br&gt;</div></td></tr> <tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==What is &#039;&#039;GFtbox&#039;&#039;, how does it work and where is it?==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==What is &#039;&#039;GFtbox&#039;&#039;, how does it work and where is it?==</div></td></tr> </table>

AndrewBangham