http://cmpdartsvr3.cmp.uea.ac.uk/index.php?action=history&feed=atom&title=Modelling_heart_development_%28A%29
Modelling heart development (A) - Revision history
2026-05-06T16:08:17Z
Revision history for this page on the wiki
MediaWiki 1.43.8
http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php?title=Modelling_heart_development_(A)&diff=5546&oldid=prev
AndrewBangham at 10:12, 15 July 2011
2011-07-15T10:12:08Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:12, 15 July 2011</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[GFtbox Workshop pages| Back to Workshop pages]]<br><br></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Put in downloadable model - but first we need to remove such quirks as ungrowing to increase the density of vertices (needed then as we were using 32 bit computer and vertices were a finite resource).</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Put in downloadable model - but first we need to remove such quirks as ungrowing to increase the density of vertices (needed then as we were using 32 bit computer and vertices were a finite resource).</div></td></tr>
</table>
AndrewBangham
http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php?title=Modelling_heart_development_(A)&diff=5544&oldid=prev
AndrewBangham at 10:10, 15 July 2011
2011-07-15T10:10:58Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 10:10, 15 July 2011</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[File:GPT_Heart6C4_JAB_1_20110714</del>.<del style="font-weight: bold; text-decoration: none;">zip]]</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Put in downloadable model - but first we need to remove such quirks as ungrowing to increase the density of vertices (needed then as we were using 32 bit computer and vertices were a finite resource)</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><br><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><br><br></div></td></tr>
</table>
AndrewBangham
http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php?title=Modelling_heart_development_(A)&diff=5547&oldid=prev
AndrewBangham at 11:08, 14 July 2011
2011-07-14T11:08:01Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:08, 14 July 2011</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[File:GPT_Heart6C4_JAB_1_20110714.zip]]</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"><br><br></ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <span style="color: CornflowerBlue"></span></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> <span style="color: CornflowerBlue"></span></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> function m = gpt_heart6c4_jab_1_20110714( m )</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div> function m = gpt_heart6c4_jab_1_20110714( m )</div></td></tr>
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AndrewBangham
http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php?title=Modelling_heart_development_(A)&diff=5545&oldid=prev
AndrewBangham: Created page with 'Interaction function developed alongside Meilhac and Le Garrec<br>< br> <span style="color: CornflowerBlue"></span> function m = gpt_heart6c4_jab_1_20110714( m ) <span style="…'
2011-07-14T10:53:49Z
<p>Created page with 'Interaction function developed alongside Meilhac and Le Garrec<br>< br> <span style="color: CornflowerBlue"></span> function m = gpt_heart6c4_jab_1_20110714( m ) <span style="…'</p>
<p><b>New page</b></p><div>Interaction function developed alongside Meilhac and Le Garrec<br>< br><br />
<span style="color: CornflowerBlue"></span><br />
function m = gpt_heart6c4_jab_1_20110714( m )<br />
<span style="color: Green">%m = gpt_heart6c4_jab_1_20110714( m )</span><br />
<span style="color: Green">% Morphogen interaction function.</span><br />
<span style="color: Green">% Written at 2011-07-14 09:57:29.</span><br />
<span style="color: Green">% GFtbox revision 3609, 2011-07-13 16:10:06.263095.</span><br />
<br />
<span style="color: Green">% The user may edit any part of this function between delimiters</span><br />
<span style="color: Green">% of the form "USER CODE..." and "END OF USER CODE...". The</span><br />
<span style="color: Green">% delimiters themselves must not be moved, edited, deleted, or added.</span><br />
<br />
if isempty(m), return; end<br />
<br />
fprintf( 1, '<span style="color: Green">%s found in %s\n', mfilename(), which(mfilename()) );</span><br />
<br />
try<br />
m = local_setproperties( m );<br />
catch<br />
end<br />
<br />
realtime = m.globalDynamicProps.currenttime;<br />
<br />
<span style="color: CornflowerBlue"></span><br />
<span style="color: Green">%%% USER CODE: INITIALISATION</span><br />
<br />
<span style="color: Green">% In this section you may modify the mesh in any way whatsoever.</span><br />
<span style="color: Green">%%% END OF USER CODE: INITIALISATION</span><br />
<br />
<span style="color: CornflowerBlue"></span><br />
<span style="color: Green">%%% SECTION 1: ACCESSING MORPHOGENS AND TIME.</span><br />
<span style="color: Green">%%% AUTOMATICALLY GENERATED CODE: DO NOT EDIT.</span><br />
<br />
if isempty(m), return; end<br />
<br />
setGlobals();<br />
global gNEW_KA_PAR gNEW_KA_PER gNEW_KB_PAR gNEW_KB_PER<br />
global gNEW_K_NOR gNEW_POLARISER gNEW_STRAINRET gNEW_ARREST<br />
dt = m.globalProps.timestep;<br />
polariser_i = gNEW_POLARISER;<br />
P = m.morphogens(:,polariser_i);<br />
[kapar_i,kapar_p,kapar_a,kapar_l] = getMgenLevels( m, 'KAPAR' );<br />
[kaper_i,kaper_p,kaper_a,kaper_l] = getMgenLevels( m, 'KAPER' );<br />
[kbpar_i,kbpar_p,kbpar_a,kbpar_l] = getMgenLevels( m, 'KBPAR' );<br />
[kbper_i,kbper_p,kbper_a,kbper_l] = getMgenLevels( m, 'KBPER' );<br />
[knor_i,knor_p,knor_a,knor_l] = getMgenLevels( m, 'KNOR' );<br />
[strainret_i,strainret_p,strainret_a,strainret_l] = getMgenLevels( m, 'STRAINRET' );<br />
[arrest_i,arrest_p,arrest_a,arrest_l] = getMgenLevels( m, 'ARREST' );<br />
[id_venous_pole_i,id_venous_pole_p,id_venous_pole_a,id_venous_pole_l] = getMgenLevels( m, 'ID_VENOUS_POLE' );<br />
[id_arterial_pole_i,id_arterial_pole_p,id_arterial_pole_a,id_arterial_pole_l] = getMgenLevels( m, 'ID_ARTERIAL_POLE' );<br />
[id_iv_i,id_iv_p,id_iv_a,id_iv_l] = getMgenLevels( m, 'ID_IV' );<br />
[id_dorsal_line_i,id_dorsal_line_p,id_dorsal_line_a,id_dorsal_line_l] = getMgenLevels( m, 'ID_DORSAL_LINE' );<br />
[s_dorsal_line_i,s_dorsal_line_p,s_dorsal_line_a,s_dorsal_line_l] = getMgenLevels( m, 'S_DORSAL_LINE' );<br />
[id_right_i,id_right_p,id_right_a,id_right_l] = getMgenLevels( m, 'ID_RIGHT' );<br />
[s_right_i,s_right_p,s_right_a,s_right_l] = getMgenLevels( m, 'S_RIGHT' );<br />
[id_ventral_line_i,id_ventral_line_p,id_ventral_line_a,id_ventral_line_l] = getMgenLevels( m, 'ID_VENTRAL_LINE' );<br />
[id_sventral_line_i,id_sventral_line_p,id_sventral_line_a,id_sventral_line_l] = getMgenLevels( m, 'ID_SVENTRAL_LINE' );<br />
[id_sdorsal_line_i,id_sdorsal_line_p,id_sdorsal_line_a,id_sdorsal_line_l] = getMgenLevels( m, 'ID_SDORSAL_LINE' );<br />
[id_sright_i,id_sright_p,id_sright_a,id_sright_l] = getMgenLevels( m, 'ID_SRIGHT' );<br />
[id_source_i,id_source_p,id_source_a,id_source_l] = getMgenLevels( m, 'ID_SOURCE' );<br />
[id_sink_i,id_sink_p,id_sink_a,id_sink_l] = getMgenLevels( m, 'ID_SINK' );<br />
[id_art_band_i,id_art_band_p,id_art_band_a,id_art_band_l] = getMgenLevels( m, 'ID_ART_BAND' );<br />
[id_newsink_i,id_newsink_p,id_newsink_a,id_newsink_l] = getMgenLevels( m, 'ID_NEWSINK' );<br />
[s_newsink_i,s_newsink_p,s_newsink_a,s_newsink_l] = getMgenLevels( m, 'S_NEWSINK' );<br />
[id_snewsink_i,id_snewsink_p,id_snewsink_a,id_snewsink_l] = getMgenLevels( m, 'ID_SNEWSINK' );<br />
[id_clone_density_i,id_clone_density_p,id_clone_density_a,id_clone_density_l] = getMgenLevels( m, 'ID_CLONE_DENSITY' );<br />
[id_right_ventricle_i,id_right_ventricle_p,id_right_ventricle_a,id_right_ventricle_l] = getMgenLevels( m, 'ID_RIGHT_VENTRICLE' );<br />
[id_left_ventricle_i,id_left_ventricle_p,id_left_ventricle_a,id_left_ventricle_l] = getMgenLevels( m, 'ID_LEFT_VENTRICLE' );<br />
[id_left_i,id_left_p,id_left_a,id_left_l] = getMgenLevels( m, 'ID_LEFT' );<br />
[id_vein_band_i,id_vein_band_p,id_vein_band_a,id_vein_band_l] = getMgenLevels( m, 'ID_VEIN_BAND' );<br />
[id_new_source_i,id_new_source_p,id_new_source_a,id_new_source_l] = getMgenLevels( m, 'ID_NEW_SOURCE' );<br />
[s_left_i,s_left_p,s_left_a,s_left_l] = getMgenLevels( m, 'S_LEFT' );<br />
[id_sleft_i,id_sleft_p,id_sleft_a,id_sleft_l] = getMgenLevels( m, 'ID_SLEFT' );<br />
[id_nsource2_i,id_nsource2_p,id_nsource2_a,id_nsource2_l] = getMgenLevels( m, 'ID_NSOURCE2' );<br />
[s_nsource2_i,s_nsource2_p,s_nsource2_a,s_nsource2_l] = getMgenLevels( m, 'S_NSOURCE2' );<br />
[id_snsource2_i,id_snsource2_p,id_snsource2_a,id_snsource2_l] = getMgenLevels( m, 'ID_SNSOURCE2' );<br />
[id_nsink2_i,id_nsink2_p,id_nsink2_a,id_nsink2_l] = getMgenLevels( m, 'ID_NSINK2' );<br />
[s_nsink2_i,s_nsink2_p,s_nsink2_a,s_nsink2_l] = getMgenLevels( m, 'S_NSINK2' );<br />
[id_snsink2_i,id_snsink2_p,id_snsink2_a,id_snsink2_l] = getMgenLevels( m, 'ID_SNSINK2' );<br />
[id_pol2_i,id_pol2_p,id_pol2_a,id_pol2_l] = getMgenLevels( m, 'ID_POL2' );<br />
[s_pol2_i,s_pol2_p,s_pol2_a,s_pol2_l] = getMgenLevels( m, 'S_POL2' );<br />
<br />
<span style="color: Green">% Mesh type: cylinder</span><br />
<span style="color: Green">% basecap: 0</span><br />
<span style="color: Green">% baseheight: 1</span><br />
<span style="color: Green">% baserings: 0</span><br />
<span style="color: Green">% circumdivs: 30</span><br />
<span style="color: Green">% height: 1.5</span><br />
<span style="color: Green">% heightdivs: 30</span><br />
<span style="color: Green">% radius: 0.1</span><br />
<span style="color: Green">% randomness: 0</span><br />
<span style="color: Green">% topcap: 0</span><br />
<span style="color: Green">% topheight: 1</span><br />
<span style="color: Green">% toprings: 0</span><br />
<span style="color: Green">% version: 1</span><br />
<br />
<span style="color: Green">% Morphogen Diffusion Decay Dilution Mutant</span><br />
<span style="color: Green">% -------------------------------------------------</span><br />
<span style="color: Green">% KAPAR ---- ---- ---- ----</span><br />
<span style="color: Green">% KAPER ---- ---- ---- ----</span><br />
<span style="color: Green">% KBPAR ---- ---- ---- ----</span><br />
<span style="color: Green">% KBPER ---- ---- ---- ----</span><br />
<span style="color: Green">% KNOR ---- ---- ---- ----</span><br />
<span style="color: Green">% POLARISER 0.05 ---- ---- ----</span><br />
<span style="color: Green">% STRAINRET ---- ---- ---- ----</span><br />
<span style="color: Green">% ARREST ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_VENOUS_POLE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_ARTERIAL_POLE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_IV ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_DORSAL_LINE ---- ---- ---- ----</span><br />
<span style="color: Green">% S_DORSAL_LINE 0.0001 0.1 ---- ----</span><br />
<span style="color: Green">% ID_RIGHT ---- ---- ---- ----</span><br />
<span style="color: Green">% S_RIGHT 0.0001 0.1 ---- ----</span><br />
<span style="color: Green">% ID_VENTRAL_LINE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_SVENTRAL_LINE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_SDORSAL_LINE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_SRIGHT ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_SOURCE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_SINK ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_ART_BAND ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_NEWSINK ---- ---- ---- ----</span><br />
<span style="color: Green">% S_NEWSINK 0.01 0.1 ---- ----</span><br />
<span style="color: Green">% ID_SNEWSINK ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_CLONE_DENSITY ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_RIGHT_VENTRICLE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_LEFT_VENTRICLE ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_LEFT ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_VEIN_BAND ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_NEW_SOURCE ---- ---- ---- ----</span><br />
<span style="color: Green">% S_LEFT 0.0001 0.1 ---- ----</span><br />
<span style="color: Green">% ID_SLEFT ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_NSOURCE2 ---- ---- ---- ----</span><br />
<span style="color: Green">% S_NSOURCE2 0.01 0.1 ---- ----</span><br />
<span style="color: Green">% ID_SNSOURCE2 ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_NSINK2 ---- ---- ---- ----</span><br />
<span style="color: Green">% S_NSINK2 0.01 0.1 ---- ----</span><br />
<span style="color: Green">% ID_SNSINK2 ---- ---- ---- ----</span><br />
<span style="color: Green">% ID_POL2 ---- ---- ---- ----</span><br />
<span style="color: Green">% S_POL2 0.01 ---- ---- ----</span><br />
<br />
<br />
<span style="color: Green">%%% USER CODE: MORPHOGEN INTERACTIONS</span><br />
<br />
<span style="color: Green">% In this section you may modify the mesh in any way that does not</span><br />
<span style="color: CornflowerBlue"></span><br />
<span style="color: Green">% alter the set of nodes.</span><br />
if Steps(m)==0<br />
<span style="color: Green">% Put any code here that should only be performed at the start of</span><br />
<span style="color: Green">% the simulation, for example, to set up initial morphogen values.</span><br />
maxz=max(m.nodes(:,3)); <span style="color: Green">% the 3 stands for z axis, i.e. x,y,z are 1,2,3</span><br />
minz=min(m.nodes(:,3));<br />
epsilon=0.01;<br />
id_venous_pole_p(m.nodes(:,3)<minz+epsilon)=1;<br />
id_arterial_pole_p(m.nodes(:,3)>maxz-epsilon)=1;<br />
d=maxz-minz;<br />
<br />
top=d*0.5;<br />
bot=d*0.25;<br />
id_iv_p((m.nodes(:,3)>bot+minz)&(m.nodes(:,3)<top+minz))=1;<br />
<br />
topsink=d*0.75;<br />
botsink=d*0.25; <span style="color: Green">%was 0.5</span><br />
id_art_band_p((m.nodes(:,3)>botsink+minz)&(m.nodes(:,3)<topsink+minz))=1;<br />
<br />
topsinknodes = (m.nodes(:,3)>topsink+minz-5*epsilon)&(m.nodes(:,3)<topsink+minz+5*epsilon);<br />
<span style="color: Green">% id_nsink2_p(topsinknodes)=1;</span><br />
m.morphogenclamp(topsinknodes,s_pol2_i) = 1;<br />
s_pol2_p(topsinknodes) = 0;<br />
botsinknodes = (m.nodes(:,3)>botsink+minz-5*epsilon)&(m.nodes(:,3)<botsink+minz+5*epsilon);<br />
<span style="color: Green">% id_nsource2_p(botsinknodes)=1;</span><br />
m.morphogenclamp(botsinknodes,s_pol2_i) = 1;<br />
s_pol2_p(botsinknodes) = 1;<br />
<br />
topsink=d*0.5; <span style="color: Green">% was 0.24; % place source inside the left ventricle</span><br />
botsink=d*0.25; <span style="color: Green">% was 0.2;</span><br />
id_vein_band_p((m.nodes(:,3)>botsink+minz)&(m.nodes(:,3)<topsink+minz))=1;<br />
<br />
dorsal=max(m.nodes(:,2));<br />
id_dorsal_line_p(m.nodes(:,2)>dorsal-epsilon/4)=1; <br />
ventral=min(m.nodes(:,2));<br />
id_ventral_line_p(m.nodes(:,2)<ventral+epsilon/4)=1; <br />
<br />
right=min(m.nodes(:,1));<br />
id_right_p(m.nodes(:,1)<right+epsilon/4)=1;<br />
left=max(m.nodes(:,1));<br />
id_left_p(m.nodes(:,1)>left-epsilon/4)=1;<br />
<br />
id_source_p=id_venous_pole_p;<span style="color: Green">% .* id_dorsal_line_p;</span><br />
id_sink_p=id_arterial_pole_p;<span style="color: Green">%.*id_ventral_line_p;</span><br />
<br />
id_right_ventricle_p=id_right_p.*id_art_band_p;<br />
id_left_ventricle_p=id_ventral_line_p.*id_vein_band_p;<br />
<span style="color: Green">%id_left_ventricle_p=id_left_p.*id_vein_band_p;</span><br />
<br />
id_newsink_p=id_right_p.*id_art_band_p;<br />
id_clone_density_p=ones(size(id_clone_density_p));<br />
<br />
end<br />
if realtime<20 <span style="color: Green">% hours</span><br />
kapar_p=-0.05 .* (id_art_band_l);<br />
kbpar_p=-0.05 .* (id_art_band_l);<br />
elseif (realtime>20-dt) && (realtime<20+dt)<br />
id_sdorsal_line_p=s_dorsal_line_l;<br />
id_sright_p =s_right_l;<br />
id_sleft_p =s_left_l;<br />
id_snewsink_p =100*s_newsink_l;<br />
id_snsink2_p =100*s_nsink2_l;<br />
id_snsource2_p =100*s_nsource2_l;<br />
id_new_source_p =id_left_ventricle_l;<br />
id_clone_density_p=100*ones(size(id_clone_density_p));<br />
<br />
<br />
<span style="color: Green">% m = leaf_makesecondlayer( m, ... % This function adds biological cells.</span><br />
<span style="color: Green">% 'mode', 'each', ... % Make biological cells randomly scattered over the flower.</span><br />
<span style="color: Green">% 'relinitarea', 1/10000, ... % was 1/2000 Each cell has area was 1/8000 of the initial area of the flower.</span><br />
<span style="color: Green">% 'probpervx', 'ID_CLONE_DENSITY', ...</span><br />
<span style="color: Green">% ...% 'fraccells', 0.1, ... % One cell will be created at a random position inside each the finite elements.</span><br />
<span style="color: Green">% ...%'fraccells', 1, ... % One cell will be created at a random position inside each the finite elements.</span><br />
<span style="color: Green">% 'sides', 6, ... % Each cell is approximated as a 6-sided regular polygon.</span><br />
<span style="color: Green">% 'colors', [1 0 0], ... % Each cell is red.</span><br />
<span style="color: Green">% 'add', true ); % These cells are added to any cells existing already.</span><br />
<br />
else<br />
k=s_pol2_l/max(s_pol2_l);<br />
BASICGROWTH=0.03;<br />
DeltaKpar=...<br />
id_art_band_l.* inh(100,(1-k).*id_sleft_l+k.*id_sdorsal_line_l);<br />
<span style="color: Green">% +id_vein_band_l.*inh(100,id_sdorsal_line_l);</span><br />
kapar_p=BASICGROWTH * DeltaKpar ;<br />
kbpar_p=BASICGROWTH * DeltaKpar;<br />
<br />
anisotropy=0.1;<br />
DeltaKper=anisotropy.*(id_art_band_l);<br />
kaper_p=BASICGROWTH*DeltaKper;<br />
kbper_p=BASICGROWTH*DeltaKper;<br />
<br />
<span style="color: Green">% id_iv_l .* inh(100,id_sdorsal_line_l)... % bend and turn in iv region</span><br />
<span style="color: Green">% + id_art_band_l .* inh(100,id_sleft_l);</span><br />
<span style="color: Green">% kapar_p=BASICGROWTH * DeltaKpar;</span><br />
<span style="color: Green">% kbpar_p=BASICGROWTH * DeltaKpar;</span><br />
<span style="color: Green">% </span><br />
<span style="color: Green">% BASICGROWTHPER=0; %BASICGROWTH*0.5; </span><br />
<span style="color: Green">% DeltaKper=...</span><br />
<span style="color: Green">% 0.3*id_art_band_l .* inh(100,id_sleft_l)...</span><br />
<span style="color: Green">% +0.3*id_iv_l .* inh(100,id_sdorsal_line_l);</span><br />
<span style="color: Green">% kaper_p=BASICGROWTHPER * DeltaKper;</span><br />
<span style="color: Green">% kbper_p=BASICGROWTHPER * DeltaKper;</span><br />
<span style="color: Green">% do the growth</span><br />
end<br />
if realtime>60<br />
m.mgen_production(:,polariser_i) = 0.1...<br />
*((id_source_p+1*id_new_source_l)...<br />
+ 0.5 ... <span style="color: Green">% was 1</span><br />
- P.*(id_sink_l+1*id_snewsink_l));<br />
else<br />
m.mgen_production(:,polariser_i) = 0.1...<br />
*((id_source_p+0*id_new_source_l)...<br />
+ 0.5 ... <span style="color: Green">% was 1</span><br />
- P.*(id_sink_l+0*id_snewsink_l));<br />
end<br />
m.mgen_production(:,s_pol2_i) = 0; <span style="color: Green">% 0.1*(id_nsource2_l - s_pol2_l.*id_nsink2_l);</span><br />
m.mgen_production(:,s_dorsal_line_i) = 0.1*(id_dorsal_line_p);<br />
m.mgen_production(:,s_right_i) = 0.1*(id_right_p);<br />
m.mgen_production(:,s_left_i) = 0.1*(id_left_p);<br />
m.mgen_production(:,s_newsink_i) = 0.1*(id_newsink_p);<br />
<span style="color: CornflowerBlue"></span><br />
<span style="color: Green">%%% END OF USER CODE: MORPHOGEN INTERACTIONS</span><br />
<br />
<span style="color: Green">%%% SECTION 3: INSTALLING MODIFIED VALUES BACK INTO MESH STRUCTURE</span><br />
<span style="color: Green">%%% AUTOMATICALLY GENERATED CODE: DO NOT EDIT.</span><br />
m.morphogens(:,polariser_i) = P;<br />
m.morphogens(:,kapar_i) = kapar_p;<br />
m.morphogens(:,kaper_i) = kaper_p;<br />
m.morphogens(:,kbpar_i) = kbpar_p;<br />
m.morphogens(:,kbper_i) = kbper_p;<br />
m.morphogens(:,knor_i) = knor_p;<br />
m.morphogens(:,strainret_i) = strainret_p;<br />
m.morphogens(:,arrest_i) = arrest_p;<br />
m.morphogens(:,id_venous_pole_i) = id_venous_pole_p;<br />
m.morphogens(:,id_arterial_pole_i) = id_arterial_pole_p;<br />
m.morphogens(:,id_iv_i) = id_iv_p;<br />
m.morphogens(:,id_dorsal_line_i) = id_dorsal_line_p;<br />
m.morphogens(:,s_dorsal_line_i) = s_dorsal_line_p;<br />
m.morphogens(:,id_right_i) = id_right_p;<br />
m.morphogens(:,s_right_i) = s_right_p;<br />
m.morphogens(:,id_ventral_line_i) = id_ventral_line_p;<br />
m.morphogens(:,id_sventral_line_i) = id_sventral_line_p;<br />
m.morphogens(:,id_sdorsal_line_i) = id_sdorsal_line_p;<br />
m.morphogens(:,id_sright_i) = id_sright_p;<br />
m.morphogens(:,id_source_i) = id_source_p;<br />
m.morphogens(:,id_sink_i) = id_sink_p;<br />
m.morphogens(:,id_art_band_i) = id_art_band_p;<br />
m.morphogens(:,id_newsink_i) = id_newsink_p;<br />
m.morphogens(:,s_newsink_i) = s_newsink_p;<br />
m.morphogens(:,id_snewsink_i) = id_snewsink_p;<br />
m.morphogens(:,id_clone_density_i) = id_clone_density_p;<br />
m.morphogens(:,id_right_ventricle_i) = id_right_ventricle_p;<br />
m.morphogens(:,id_left_ventricle_i) = id_left_ventricle_p;<br />
m.morphogens(:,id_left_i) = id_left_p;<br />
m.morphogens(:,id_vein_band_i) = id_vein_band_p;<br />
m.morphogens(:,id_new_source_i) = id_new_source_p;<br />
m.morphogens(:,s_left_i) = s_left_p;<br />
m.morphogens(:,id_sleft_i) = id_sleft_p;<br />
m.morphogens(:,id_nsource2_i) = id_nsource2_p;<br />
m.morphogens(:,s_nsource2_i) = s_nsource2_p;<br />
m.morphogens(:,id_snsource2_i) = id_snsource2_p;<br />
m.morphogens(:,id_nsink2_i) = id_nsink2_p;<br />
m.morphogens(:,s_nsink2_i) = s_nsink2_p;<br />
m.morphogens(:,id_snsink2_i) = id_snsink2_p;<br />
m.morphogens(:,id_pol2_i) = id_pol2_p;<br />
m.morphogens(:,s_pol2_i) = s_pol2_p;<br />
<br />
<span style="color: Green">%%% USER CODE: FINALISATION</span><br />
<br />
<span style="color: Green">% In this section you may modify the mesh in any way whatsoever.</span><br />
<span style="color: Green">%%% END OF USER CODE: FINALISATION</span><br />
<br />
end<br />
<br />
<br />
<span style="color: Green">%%% USER CODE: SUBFUNCTIONS</span><br />
<br />
<span style="color: CornflowerBlue"></span><br />
function m = local_setproperties( m )<br />
<span style="color: Green">% This function is called at time zero in the INITIALISATION section of the</span><br />
<span style="color: Green">% interaction function. It provides commands to set each of the properties</span><br />
<span style="color: Green">% that are contained in m.globalProps. Uncomment whichever ones you would</span><br />
<span style="color: Green">% like to set yourself, and put in whatever value you want.</span><br />
<span style="color: Green">%</span><br />
<span style="color: Green">% Some of these properties are for internal use only and should never be</span><br />
<span style="color: Green">% set by the user. At some point these will be moved into a different</span><br />
<span style="color: Green">% component of m, but for the present, just don't change anything unless</span><br />
<span style="color: Green">% you know what it is you're changing.</span><br />
<br />
<span style="color: Green">% m = leaf_setproperty( m, 'trinodesvalid', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'prismnodesvalid', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'thicknessRelative', 0.020000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'thicknessArea', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'activeGrowth', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'displayedGrowth', 30 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowNegativeGrowth', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'usePrevDispAsEstimate', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'mingradient', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'thresholdsq', 0.005874 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'splitmargin', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'thresholdmgen', 0.500000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bulkmodulus', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'poissonsRatio', 0.300000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'timestep', 2.500000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'timeunitname', 'hour' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'distunitname', 'mm' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'validateMesh', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowSplitLongFEM', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'longSplitThresholdPower', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowSplitBentFEM', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowSplitBio', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowFlipEdges', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowElideEdges', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'mincellangle', 0.200000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'alwaysFlat', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'flatten', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'flattenratio', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'useGrowthTensors', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'plasticGrowth', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'totalinternalrotation', 2.619720 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'stepinternalrotation', 2.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'showinternalrotation', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'internallyrotated', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'maxFEcells', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'inittotalcells', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'maxBioAcells', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'maxBioBcells', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'colors', (6 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'colorvariation', 0.100000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'colorparams', (12 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'freezing', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'mgen_interaction', (unknown type ''function_handle'') );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'mgen_interactionName', 'gpt_heart6c4_jab_1_20110714' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowInteraction', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'interactionValid', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'gaussInfo', (unknown type ''struct'') );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'stitchDFs', [] );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'D', (36 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'C', (36 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'G', (6 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'solver', 'cgs' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'solvertolerance', 0.001000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'diffusiontolerance', 0.000010 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'maxIters', 4.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'maxsolvetime', 1000.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'cgiters', 98.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'simsteps', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'stepsperrender', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'growthEnabled', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'diffusionEnabled', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'makemovie', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'moviefile', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'codec', 'None' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'autonamemovie', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'overwritemovie', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'framesize', [] );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'mov', [] );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'jiggleProportion', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'cvtperiter', 0.200000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'boingNeeded', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'initialArea', 0.940756 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bendunitlength', 0.969926 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'targetRelArea', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'defaultinterp', 'min' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'readonly', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'projectdir', 'C:\MATLAB\Growth Models' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'modelname', 'GPT_Heart6C4_JAB_1_20110714' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowsave', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'addedToPath', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bendsplit', 0.300000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'dorsaltop', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'comment', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bioAsplitcells', 1.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bioApullin', 0.142857 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bioAfakepull', 0.202073 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'coderevision', 3603.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'coderevisiondate', '2011-07-05 10:45:50.776228' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'modelrevision', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'modelrevisiondate', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'vxgrad', (108 values) );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'lengthscale', 1.500000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'performinternalrotation', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'thicknessMode', 'physical' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'legendTemplate', '%T: %q\n%m' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'relativepolgrad', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'userpolarisation', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'usepolfreezebc', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'usefrozengradient', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'defaultViewParams', (unknown type ''struct'') );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'starttime', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'displayedMulti', [] );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'perturbInitGrowthEstimate', 0.000010 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'perturbRelGrowthEstimate', 0.010000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'perturbDiffusionEstimate', 0.000100 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'resetRand', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'splitmorphogen', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'unitbulkmodulus', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'scalebarvalue', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'rectifyverticals', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'flattenforceconvex', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bioApresplitproc', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'bioApostsplitproc', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'canceldrift', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'solverprecision', 'double' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'solvertolerancemethod', 'norm' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'allowsparse', true );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'flashmovie', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'defaultazimuth', -45.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'defaultelevation', 33.750000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'defaultroll', 0.000000 );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'interactive', false );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'savedrunname', '' );</span><br />
<span style="color: Green">% m = leaf_setproperty( m, 'savedrundesc', '' );</span><br />
end</div>
AndrewBangham