http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?action=history&feed=atom&title=VolViewerCommandLineArguments 2026-05-03T03:21:36Z Revision history for this page on the wiki MediaWiki 1.43.8 http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=VolViewerCommandLineArguments&diff=5609&oldid=prev 2011-11-08T16:00:00Z

<p>Created page with &#039; Below is a list of command line arguments supported by the VolViewer application: ==General== voldir=XXXXX //To specify a local directory containing an image stack …&#039;</p> <p><b>New page</b></p><div><br /> Below is a list of command line arguments supported by the VolViewer application:<br /> <br /> ==General==<br /> voldir=XXXXX //To specify a local directory containing an image stack <br /> msr=XXXXX //To specify a local MSR file (measurement geometry object) to load<br /> tfunc=XXXXX //To specilfy a local TFN file (transfer function) to load<br /> slc=XXXXX //To specify a local SLC file (clipping planes) to load<br /> auto_close=1 //Tell the application to automatically close once all command line arguments are executed<br /> auto_hide=1 //Tell the application to hide and run in a gui less mode<br /> <br /> ==Movies==<br /> <br /> movie_rotate(sampling, savefolder, x, y, z, angle) //To create a rotation movie from an image<br /> <br /> *sampling: is the angle step size<br /> *savefolder: is the folder we wish to save frames to<br /> *x,y,z: either 0 or 1 to enable rotation around that axis<br /> *angle: the angle to rotate about<br /> <br /> movie_rock(sampling, savefolder, angle) //To create a rock movie from an image <br /> <br /> *sampling: is the angle step size<br /> *savefolder: is the folder we wish to save frames to<br /> *angle: the angle to rock by (+angle to -angle)<br /> <br /> ==Projections==<br /> <br /> set_view( x, y, z) //Set the default view of the volume as euler angles<br /> render=1 //Creates a png of the volume in the root folder<br /> <br /> ==Watchfile==<br /> <br /> watchfile=XXXXX //A path to a file to watch<br /> <br /> This allows the viewer to be setup to watch a specific ascii file. The file can then contain any of the command line arguments and the program will react to any modification done to this file while launched. This is a simple way to script or interact with the viewer from an external application.<br /> <br /> ==OMERO==<br /> <br /> omero_server=XXXXX //To specify the url of an omero server<br /> omero_username=XXXXX //To specify a username to connect to the omero server<br /> omero_password=XXXXX //To specify the password for the given username to connect to the omero server<br /> omero_sessionid=XXXXX //To specify a session id to join on the omero server<br /> omero_port=XXXXX //To specify the port of the omero server<br /> omero_imageid=XXXXX //To specify the image id on the omero server we wish to load in volviewer</div>

JeromeAvondo