VolViewer commands by function - Revision history

AndrewBangham at 18:37, 1 March 2012

2012-03-01T18:37:46Z

← Older revision		Revision as of 19:37, 1 March 2012
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	\| \|\|set_clear_all_MSR()\|\| clears the points, lines and facets		\| \|\|set_clear_all_MSR()\|\| clears the points, lines and facets
	\|-		\|-
	\| \|\|open_slc('somepath\file.slc') clipping planes		\| \|\|open_slc('somepath\file.slc') \|\|clipping planes
	\|-		\|-
	\| \|\|save_tfn('somepath\file.slc')		\| \|\|save_tfn('somepath\file.slc')
	\|-		\|-
	\| \|\|open_tfn('somepath\file.tfn')') transfer function, i.e. brightness/contrast/thresholds		\| \|\|open_tfn('somepath\file.tfn')') \|\|transfer function, i.e. brightness/contrast/thresholds
	\|-		\|-
	\| \|\|save_tfn('somepath\file.tfn')		\| \|\|save_tfn('somepath\file.tfn')
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	\|-		\|-
	\| \|\|open_slc('somepath\file.slc') \|\| clipping planes		\| \|\|open_slc('somepath\file.slc') \|\| clipping planes
	\|-		\|-valign="top"
	\| \|\|set_channels(int red, int green, int blue) \|\| 0 sets colour channel off, 1 turns it on. 0,0,0 turns off all channels, i.e. hides the image		\| \|\|set_channels(int red, int green, int blue) \|\| 0 sets colour channel off, 1 turns it on. 0,0,0 turns off all channels, i.e. hides the image
	\|-		\|-

AndrewBangham at 18:35, 1 March 2012

2012-03-01T18:35:56Z

← Older revision		Revision as of 19:35, 1 March 2012
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	\|-		\|-
	\| \|\|set_show_orthosections() \|\| show orthosections		\| \|\|set_show_orthosections() \|\| show orthosections
	}		\|}

AndrewBangham at 18:34, 1 March 2012

2012-03-01T18:34:57Z

← Older revision		Revision as of 19:34, 1 March 2012
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	\|-		\|-
	\| \|\|set_close() \|\| close VolViewer		\| \|\|set_close() \|\| close VolViewer
			\|-valign="top"
			\| \|\|wait_for_quit() \|\| queues subsequent commands which are then executed when the user closes the application.
	\|-		\|-
	\| \|\|set_hide() \|\| hide VolViewer		\| \|\|set_hide() \|\| hide VolViewer

AndrewBangham at 18:32, 1 March 2012

2012-03-01T18:32:22Z

@@ Line 8: / Line 8: @@
 where 'D:\VolViewer_x64' is the path to both VolViewer itself and the location of a 'WatchFile.txt' into which commands are written.
 {| border="0" cellpadding="1" cellspacing="1"
-|width="100pt"| '''Image'''||open_image_stack(int channel, 'somepath\slice000.png') 0 all, 1 red, 2 green, 3 blue, directory of image slices
+|width="100pt"|'''Image'''||open_image_stack(int channel, 'somepath\slice000.png') || 0 all, 1 red, 2 green, 3 blue, directory of image slices
 |-
 |   ||save_image_stack('somepath')
@@ Line 21: / Line 21: @@
 |-
 | ||--------
 |-
-| width="100pt"| '''Objects'''||open_msr('somepath\file.msr') points, lines and facets placed around images
+|   ||save_msr('somepath\file.msr')
 |-
-|   ||save_msr('somepath\file.msr')
+|   ||set_clear_all_MSR()|| clears the points, lines and facets
 |-
 |   ||open_slc('somepath\file.slc') clipping planes
@@ Line 33: / Line 35: @@
 |-
 |   ||save_tfn('somepath\file.tfn')
+}

AndrewBangham at 17:48, 1 March 2012

2012-03-01T17:48:10Z

← Older revision		Revision as of 18:48, 1 March 2012
Line 2:		Line 2:
	[http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAPI]		[http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAPI]
	=Selection of VolViewer commands=		=Selection of VolViewer commands=
			The Matlab 'VolViewer' class library provides ''commandsVOL'' which will pass commands to VolViewer, e.g. in Matlab<br>
			VO=commandsVOL(VO,'set_clear_all_MSR()')
			VO is a VolViewer object created by Matlab when it launches VolViewer with<br>
			VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64')
			where 'D:\VolViewer_x64' is the path to both VolViewer itself and the location of a 'WatchFile.txt' into which commands are written.
	{\| border="0" cellpadding="1" cellspacing="1"		{\| border="0" cellpadding="1" cellspacing="1"
	\|width="100pt"\| '''Image'''\|\|open_image_stack(int channel, 'somepath\slice000.png') directory of image slices		\|width="100pt"\| '''Image'''\|\|open_image_stack(int channel, 'somepath\slice000.png') 0 all, 1 red, 2 green, 3 blue, directory of image slices
	\|-		\|-
	\| \|\|save_image_stack('somepath')		\| \|\|save_image_stack('somepath')
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	\|-		\|-
	\| \|\|save_omero_image('name', 'description') (in preparation)		\| \|\|save_omero_image('name', 'description') (in preparation)
			\|-
			\| \|\|--------
	\|-		\|-
	\| width="100pt"\| '''Objects'''\|\|open_msr('somepath\file.msr') points, lines and facets placed around images		\| width="100pt"\| '''Objects'''\|\|open_msr('somepath\file.msr') points, lines and facets placed around images
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	\|-		\|-
	\| \|\|save_tfn('somepath\file.tfn')		\| \|\|save_tfn('somepath\file.tfn')

	}		}

AndrewBangham: Created page with 'Return to VolViewer Scripting in more detail
[http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAP…'

2012-03-01T17:39:20Z

Created page with 'Return to VolViewer Scripting in more detail<br> [http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAP…'

New page

[[VolViewer Scripting in more detail|Return to VolViewer Scripting in more detail]]<br>
[http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAPI]
=Selection of VolViewer commands=
{| border="0" cellpadding="1" cellspacing="1"
|width="100pt"| '''Image'''||open_image_stack(int channel, 'somepath\slice000.png') directory of image slices
|-
| ||save_image_stack('somepath')
|-
| ||open_image_raw(int channel, 'somepath\myfile.raw')
|-
| ||save_image_raw('somepath\file.dat')
|-
| ||open_omero_image('imageid') (in preparation)
|-
| ||save_omero_image('name', 'description') (in preparation)
|-
| width="100pt"| '''Objects'''||open_msr('somepath\file.msr') points, lines and facets placed around images
|-
| ||save_msr('somepath\file.msr')
|-
| ||open_slc('somepath\file.slc') clipping planes
|-
| ||save_tfn('somepath\file.slc')
|-
| ||open_tfn('somepath\file.tfn')') transfer function, i.e. brightness/contrast/thresholds
|-
| ||save_tfn('somepath\file.tfn')

}