VolViewerOMERO: Difference between revisions
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=Overview= | =Overview= | ||
It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16. | It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16. | ||
For the exact implementation details of the OMERO loader please refer to these files [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.h h] / [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.cpp cpp] from the SVN. | For the exact implementation details of the OMERO loader please refer to these files [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.h h] / [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.cpp cpp] from the SVN. | ||
Revision as of 09:34, 28 October 2011
Overview
It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16.
For the exact implementation details of the OMERO loader please refer to these files h / cpp from the SVN.
Requirements
To build VolViewer with OMERO support you will require the following:
- An SVN client, to check out the VolViewer source code, such as TortoiseSVN for windows or svn for linux/mac.
- The latest Qt libraries.
- The OMERO cpp libraries.
How To
- Start by checking out the latest VolViewer source code from the SVN:
- Next build the OMERO cpp libraries following this guide:
- OMERO cpp libraries
- Note to build the OMERO cpp you will require the ICE libraries. Note that these exist in binary form for Windows, Mac and Linux.