SectorAnalysisToolbox Details: Difference between revisions

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(Created page with '=<span style="color: Navy">What? How? Where?</span>= 256px|thumb|The VolViewer main application window. <span style="color: Navy">'''What'''?</span> Vol…')
 
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[[Image:VolViewer.png|256px|thumb|The VolViewer main application window.]]
[[Image:VolViewer.png|256px|thumb|The VolViewer main application window.]]


<span style="color: Navy">'''What'''?</span> VolViewer is used for''' viewing volume images''' from, for example, '''confocal''' microscopy or optical projection tomography ('''OPT''').
<span style="color: Navy">'''What'''?</span> The Sector Analysis Toolbox (SAT) is used for''' analysing clonal patterns in organs'''.


<span style="color: Navy">Features:</span>
<span style="color: Navy">Features:</span>


* Real-time volume rendering using an optimized 3D texture slicing algorithm.
* Feature
* Interactive transfer functions to independently adjust opacity and intensity for up to three data channels.
* Real-time per channel thresholding, brightness and contrast operators.
* On-the-fly gradient computation for local illumination.
* Iso-surface computation with surface smoothing.
* Section viewing in any orientation / position.
* Real-time volume clipping.
* 3D measurements, filters & segmentation.
* Key frame interpolation for movie export.
* Stereo rendering using either quad buffer or anaglyph mode.
* Scripting interface to other systems, e.g. Matlab, OMERO, etc.


<span style="color: Navy">'''How'''?</span> The Sector Analysis Toolbox is coded in Matlab and a valid Matlab licence is required to use it.<br>
<span style="color: Navy">'''Where'''? </span> The toolbox is available for download here.


<span style="color: Navy">'''How'''?</span> It is open source and written in C++ using OpenGL, OpenCL and Qt.<br>
Requirements: MATLAB.
<span style="color: Navy">'''Where'''? </span>Binaries are available for the Windows, Mac OS X and Linux, see below.
 
Requirements: An OpenGL 2.1 / GLSL 1.20 compatible GPU with a recomended 512MB of memory.

Revision as of 11:00, 9 March 2012

What? How? Where?

The VolViewer main application window.

What? The Sector Analysis Toolbox (SAT) is used for analysing clonal patterns in organs.

Features:

  • Feature

How? The Sector Analysis Toolbox is coded in Matlab and a valid Matlab licence is required to use it.
Where? The toolbox is available for download here.

Requirements: MATLAB.

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