GFtbox Tutorial pages: Difference between revisions
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__TOC__ | __TOC__ | ||
=In the beginning= | =Three ways to use ''GFtbox''= | ||
There are three ways to use the ''GFtbox''.<br> | |||
#'''Doing everything from the GUI'''. This is the best way to start. See (1,2) below. | |||
#'''Do only some things''' from the GUI. Use the GUI to generate the mesh (canvas) and create growth factors (morphogens - in other words declare the variables) but capturing your ideas on how the regulatory processes work in, what we call, the interaction function. See (3) below. | |||
#'''Without the GUI''', run a pre-existing project. For example, run many examples (instances) on a cluster. We have used this extensively but the code is not yet ready for general use. | |||
='''1''' In the beginning= | |||
{| border="0" cellpadding="5" cellspacing="3" | {| border="0" cellpadding="5" cellspacing="3" | ||
|- valign="top" | |- valign="top" | ||
|width="700pt"| | |width="700pt"|[[In the beginning|For tutorial page click here]]<br><br> | ||
[[In the beginning|For tutorial page click here]]<br><br> | |||
|width="200pt"|<wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv> | |width="200pt"|<wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv> | ||
<small>Note: this model should have many more finite elements</small> | <small>Note: this model should have many more finite elements</small> | ||
|} | |} | ||
=Adding polariser= | ='''2''' Adding polariser= | ||
{| border="0" cellpadding="5" cellspacing="3" | {| border="0" cellpadding="5" cellspacing="3" | ||
|- valign="top" | |- valign="top" | ||
| Line 19: | Line 19: | ||
|width="200pt"|<wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv> | |width="200pt"|<wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv> | ||
|} | |} | ||
=Getting serious: Interaction functions= | ='''3''' Getting serious: Interaction functions= | ||
Interaction functions - programmatic modelling | Interaction functions - programmatic modelling | ||
=Something biological= | ='''4''' Something biological= | ||
Revision as of 06:16, 6 May 2011
Three ways to use GFtbox
There are three ways to use the GFtbox.
- Doing everything from the GUI. This is the best way to start. See (1,2) below.
- Do only some things from the GUI. Use the GUI to generate the mesh (canvas) and create growth factors (morphogens - in other words declare the variables) but capturing your ideas on how the regulatory processes work in, what we call, the interaction function. See (3) below.
- Without the GUI, run a pre-existing project. For example, run many examples (instances) on a cluster. We have used this extensively but the code is not yet ready for general use.
1 In the beginning
| For tutorial page click here |
<wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv>
Note: this model should have many more finite elements |
2 Adding polariser
| <wikiflv width="192" height="168" loop="true" background="white">InTheBeginning.flv|GPT in the beginning-2011-05-05-000002-0001.png</wikiflv> |
3 Getting serious: Interaction functions
Interaction functions - programmatic modelling