VolViewerOMERO: Difference between revisions
Jump to navigation
Jump to search
JeromeAvondo (talk | contribs) No edit summary |
JeromeAvondo (talk | contribs) No edit summary |
||
| Line 1: | Line 1: | ||
=Overview= | =Overview= | ||
It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read an XYZC image | It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read an XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16. For exact implementation details of the OMERO loader please refer to these files [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.h h] / [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/VolViewer/VolViewer/src/OMEROLoader.cpp cpp] from the SVN. | ||
=Requirements= | =Requirements= | ||
To build VolViewer you require the following: | To build VolViewer with OMERO support you will require the following: | ||
* An SVN client, such as [http://tortoisesvn.tigris.org/ TortoiseSVN] for windows or svn for linux/[http://www.open.collab.net/downloads/community/ mac]. | * An SVN client, to check out the VolViewer source code, such as [http://tortoisesvn.tigris.org/ TortoiseSVN] for windows or svn for linux/[http://www.open.collab.net/downloads/community/ mac]. | ||
* | * The latest [http://qt.nokia.com/downloads Qt libraries]. | ||
* The [http://trac.openmicroscopy.org.uk/ome/wiki/OmeroCpp OMERO cpp libraries]. | |||
Revision as of 09:27, 28 October 2011
Overview
It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read an XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16. For exact implementation details of the OMERO loader please refer to these files h / cpp from the SVN.
Requirements
To build VolViewer with OMERO support you will require the following:
- An SVN client, to check out the VolViewer source code, such as TortoiseSVN for windows or svn for linux/mac.
- The latest Qt libraries.
- The OMERO cpp libraries.