Current data structures: Difference between revisions
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[[MTtbox documentation|Return to MTtbox documentation]]<br><br> | [[MTtbox documentation#2 B Changing working volumes used for collision detection|Return to MTtbox documentation]]<br><br> | ||
data = | data = | ||
Revision as of 16:59, 27 April 2012
Return to MTtbox documentation
data =
PanelH: 0.0339
plotprops: [1x1 struct]
cellprops: [1x1 struct]
iterations: 0
projectname: 'MT_Edinb_20120427'
parentdir: 'C:\MyDocuments2012\Matlab\Microtubules'
factorprops: [1x1 struct]
organelleprops: [1x1 struct]
useoforganelle: [1x1 struct]
CustomMode: 1
oldcolour: [0.7020 0.7020 0.7020]
view_steps: 1
FlashCollision: 0
working: [1x1 struct]
label2organelle: {[] 'nucleus' 'vacuole' 'plasma_membrane' 'cell_wall' 'microtubules' 'actin'}
Cell organisation is specified in
data.cellprops
ans =
shape: 'Sphere'
sheetmodel: 0
maxLengthMicrons: 20
secondsPerStep: 1
micronsPerVoxelEdge: 0.8000
cubicMicronsPerVoxel: 0.5120
cellsize: [25 25 25]
colourType: 1
Vol: [25x25x25 int8]
Smooth: 'None'
dynamic: {1x8 cell}
bound_distance: 5
collide_distance: 10
vacuole: [1x1 struct]
cell_wall: [1x1 struct]
plasma_membrane: [1x1 struct]
cytoplasm: [1x1 struct]
Diameter: [1x1 struct]
microtubules: [1x1 struct]
sheetPlaneNormal: [0 1 0]
Not all organelles may be in use - the InUse flag
data.organelleprops
ans =
cell_wall: [1x1 struct]
plasma_membrane: [1x1 struct]
cytoplasm: [1x1 struct]
nucleus: [1x1 struct]
microtubules: [1x1 struct]
actin: [1x1 struct]
vacuole: [1x1 struct]
Factors represent diffusable, reacting solutes. They occupy the volume (after reshaping) with a value >0. The diffusion constants are also per-voxel.
data.factorprops
ans =
Name2Index: [0x0 struct]
Index2Name: []
Concentration: []
DiffusionConst: []
Color: []
plotprops used for GUI and plotting - uihandles probably not used at all in the code. The key handles are
data.PanelH data.plotprops.AxesH
data.plotprops
ans =
markers: 0
FigH: 1
VolViewerFoldername: 'D:\ab\Matlab stuff\VolViewer\WatchedData'
AxesH: 287.0339
TitleH: 288.0339
XlabelH: 289.0339
YlabelH: 290.0339
cameratoolbarH: 291.0339
uihandles: [1x1 struct]
axislabels: [1x1 struct]