Software

Computational biology toolboxes

GFtbox

<imgicon>GPT_thumbnail.png|120px|GFtbox</imgicon>

For modelling the growth of shapes. See Details, Download and Tutorials (PC, Mac, Linux, uses Matlab Matlab 30 day free trial and student edition)

An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.

VolViewer

<imgicon>VolViewer-logo.png|120px|VolViewer</imgicon>

(PC: Windows, your computer or a server) For viewing and measuring 3D volume images. Details Download

Written C++ it makes extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME).

Computational biology systems to which we contribute

BioformatsConverter

<imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon>

(PC: Windows) For converting microscope manufacturer proprietary file formats. Details Download

This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.

OMERO

<imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon>

(web client - SQL server) For working with the OME image database. Details Download

Open Microscopy Environment Remote Objects (OMERO). for visualising, managing, and annotating scientific image data.