What? How? Where?

The VolViewer main application window.

What? VolViewer is used for viewing volume images from, for example, confocal microscopy or optical projection tomography (OPT).

Features:

Real-time volume rendering using an optimized 3D texture slicing algorithm.
Interactive transfer functions to independently adjust opacity and intensity for up to three data channels.
Real-time per channel thresholding, brightness and contrast operators.
On-the-fly gradient computation for local illumination.
Iso-surface computation with surface smoothing.
Section viewing in any orientation / position.
Real-time volume clipping.
3D measurements, filters & segmentation.
Key frame interpolation for movie export.
Stereo rendering using either quad buffer or anaglyph mode.
Scripting interface to other systems, e.g. Matlab, OMERO, etc.

How? It is open source and written in C++ using OpenGL, OpenCL and Qt.
Where? Binaries are available for the Windows, Mac OS X and Linux, see below.

Requirements: An OpenGL 2.1 / GLSL 1.20 compatible GPU with a recomended 512MB of memory.

User Documentation

Image Gallery

<sgallery width="256" height="256" showarrows="false" showcarousel="false" showinfopane="false" timed="true" delay="3000"> 1272_wh_rgb.png Am0front.png Anthers.PNG Anti_flower_OPT.png Antirrhinum_flower_small.png Ara_seedling_colour.png Cells.png Cs0prxz0.png GL2_GUS.png Leaf_trichomes.png Leaf5.png LFY_GUS_Arabidopsis_inflorescence_512.png OleosinSeed.png OPT_Leaf_copy.png Seedling_copy.png Senecio_floret_copy.png Snapdragon_Peloric_mutant.png Tissue.png|128px]][[Image:Z9r3j2yx.png Zeds48ci.png </sgallery>

Sample Data


Antirinhium Meristem	Arabidopsis Seedling	Arabidopsis Leaf (GL2:GUS expression in red)	Arabidopsis Leaf (Ath8:::GUS expression in red)
Download	Download	Download	Download

* all data courtesy of Karen Lee [1]

Download

Although we try to keep up to date builds these sometimes lag behind the SVN trunk. So if you want the latest version / features, it is best to build the application from the trunk of the SVN. The build system is based on qmake for easy cross platform compilation.

Windows (32bit)

Windows (64bit)

Linux

MacOS X (i386/x86_64/10.5+)

Note that for the windows versions you will need to install the corresponding Microsoft Visual C++ 2010 SP1 Redistributable Package which can be found here: 32bit and 64bit.