Jerome Avondo: Difference between revisions

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[[Image:Jerome.jpg|96px|left]]
[[Image:Jerome.jpg|96px|left]]


One of the main channels to communicate information to the brain is by exploiting the human visual system. Due to this I am interested in the field of real time rendering to create new visualisation tools. I work primarily on creating visualisation tools that allow biologists to interact with microscopy data. This involves exploiting the graphics processing unit found in today's computers.
One of the main methods to communicate information to the brain is by exploiting the human visual system. Due to this I am interested in the field of real time rendering to create new visualisation tools. I work primarily on creating visualisation tools that allow biologists to interact with microscopy data. This involves exploiting the graphics processing unit to achieve real time rendering of multi-dimensional biological data. By using interactive visualisation it is possible to create intuitive tools to allow quantification of multi-dimensional biological data.


I also have an interest in data management solutions to create
I also have an interest in data management solutions to facilitate the interaction between biologists, visualisation and image processing.


online and collaborative tools.
Lastly I also have a strong interest in online and collaborative tools to facilitate interactions between multi-disciplinary teams of scientists.


<br style="clear: both" />
=Publications=
 
* OMERO: flexible, model-driven data management for experimental biology. ''Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn, Melissa Linkert, Scott Loynton, Donald MacDonald, William J Moore, Carlos Neves, Andrew Patterson, Michael Porter, Aleksandra Tarkowska, Brian Loranger, '''Jerome Avondo''', Ingvar Lagerstedt, Luca Lianas, Simone Leo, Katherine Hands, Ron T Hay, Ardan Patwardhan, Christoph Best, Gerard J Kleywegt, Gianluigi Zanetti & Jason R Swedlow'' [http://www.nature.com/nmeth/journal/v9/n3/abs/nmeth.1896.html PDF]
 
* UFEEL: Using Haptics and Stereo to place landmarks in three-dimensional volumetric images. - ''Paul Southam, Johann Strasser, Karen Lee, '''Jerome Avondo''' and Andrew Bangham'' [http://cmpdartsvr1.cmp.uea.ac.uk/wiki/BanghamLab/index.php/File:UFEEL_Using_Haptics_and_Stereo_to_place_landmarks_in_three-dimensional_volumetric_images.pdf PDF]


=Publications=
* Visualising Plant Development and Gene Expression in 3D using Optical Projection Tomography. -  ''Karen Lee, '''Jerome Avondo''', Harris Morrison, Lilian Blot, Margaret Stark, James Sharpe, J. Andrew Bangham, and Enrico S. Coen'' [http://cmpdartsvr1.cmp.uea.ac.uk/wiki/BanghamLab/index.php/File:Visualising_Plant_Development_and_Gene_Expression_in_3D_using_Optical_Projection_Tomography.pdf PDF]


=Links=
=Links=


* Personal webpage: [http://www.avondo.com www.avondo.com]
* Personal webpage: [http://www.avondo.com www.avondo.com]

Latest revision as of 10:48, 2 March 2012

Jerome.jpg

One of the main methods to communicate information to the brain is by exploiting the human visual system. Due to this I am interested in the field of real time rendering to create new visualisation tools. I work primarily on creating visualisation tools that allow biologists to interact with microscopy data. This involves exploiting the graphics processing unit to achieve real time rendering of multi-dimensional biological data. By using interactive visualisation it is possible to create intuitive tools to allow quantification of multi-dimensional biological data.

I also have an interest in data management solutions to facilitate the interaction between biologists, visualisation and image processing.

Lastly I also have a strong interest in online and collaborative tools to facilitate interactions between multi-disciplinary teams of scientists.

Publications

  • OMERO: flexible, model-driven data management for experimental biology. Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn, Melissa Linkert, Scott Loynton, Donald MacDonald, William J Moore, Carlos Neves, Andrew Patterson, Michael Porter, Aleksandra Tarkowska, Brian Loranger, Jerome Avondo, Ingvar Lagerstedt, Luca Lianas, Simone Leo, Katherine Hands, Ron T Hay, Ardan Patwardhan, Christoph Best, Gerard J Kleywegt, Gianluigi Zanetti & Jason R Swedlow PDF
  • UFEEL: Using Haptics and Stereo to place landmarks in three-dimensional volumetric images. - Paul Southam, Johann Strasser, Karen Lee, Jerome Avondo and Andrew Bangham PDF
  • Visualising Plant Development and Gene Expression in 3D using Optical Projection Tomography. - Karen Lee, Jerome Avondo, Harris Morrison, Lilian Blot, Margaret Stark, James Sharpe, J. Andrew Bangham, and Enrico S. Coen PDF

Links

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