Return to MSERs and extrema
1D Signals to MSERs and granules
Matlab function IllustrateSIV_1 illustrates how MSERs (maximally stable extremal regions) and sieves are related. We start with one dimensional signals before moving to two dimensional images and three dimensional volumes.
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Consider a signal, <math>X</math>
X=getData('PULSES3WIDE')
>blue X=0 5 5 0 0 1 1 4 3 3 2 2 1 2 2 2 1 0 0 0 1 1 0 3 2 0 0 0 6 0 0
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| <math>X</math> has three one-sample-wide maxima (<math>M^1_8</math> , <math>M^1_{24}</math> , <math>M^1_{29}</math> ), two two-sample-wide maxima (<math>M^2_{14}</math> , <math>M^2_{21}</math>) some of which, when removed, will persist as larger scale maxima, e.g. <math>M^1_{24}</math> will become two samples wide as the peak is clipped off.
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Filter
Linear
| A linear Gaussian filter with <math>\sigma=2</math> attenuates extrema without introducing new ones. But blurring may be a problem.
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h=fspecial('Gaussian',9,2);
Y=conv(X,(h(5,:)/sum(h(5,:))),'same');
Non-linear: the starting point for MSER's
| A low-pass 'o' sieve scale 1 (non-linear filter underpinning the MSER algorithm) can remove scale 1 maxima. The result is shown in red, extrema at <math>M^1_8</math> , <math>M^1_{24}</math> , <math>M^1_{29}</math> have been removed. There is no blur. The remaining signal is unchanged.
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scaleA=1;
Y1=SIVND_m(X,scaleA,'o');
| Scale 2 maxima are removed next using the 'o' sieve scale 2. The result is shown in green. Extrema at <math>M^2_{14}</math> , <math>M^2_{21}</math> have been removed. Still no blur and what remains is unchanged.
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scaleB=2;
Y2=SIVND_m(X,scaleB,'o');
| A high-pass 'o' sieve scale 1 shows the extrema that have been removed. In red the scale 1 extrema at <math>M^1_8</math> , <math>M^1_{24}</math> , <math>M^1_{29}</math> have been removed. In green extrema of scale 2 are shown. In the sieve terminology these are granules. Think of grading gravel using sieves, large holes let through large grains and small holes let through small grains. Here scale is measured as length. If granules don't fit they don't get through - unlike linear filters which leak.
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red=double(X)-double(Y1);
green=double(Y1)-double(Y2);
Repeat over scales 0 to 15
| Increasing the scale removes extrema of increasing length. The algorithm cannot create new maxima (it is an 'o' sieve) it is, therefore, scale-space preserving.
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YY=ones([length(X),1+maxscale]);
for scale=0:maxscale
Y2=SIVND_m(Y1,scale,'o',1,'l',4);
YY(:,scale+1)=Y2';
Y1=Y2; % each stage of the filter (sieve) is idempotent
end
Label the granules
| We can create a data structure that captures the properties of each granule. Each cell in the PictureElement field indexes the granule <math>X</math> position.
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'o' non-linear filter (sieve)
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g=SIVND_m(X,maxscale,'o',1,'g',4);
g = Number: 10
area: [1 1 1 2 2 2 3 3 5 12]
value: [6 1 1 2 5 1 1 1 1 1]
level: [6 4 3 2 5 1 3 2 2 1]
deltaArea: [5 2 1 7 3 12 2 2 7 19]
last_area: [6 3 2 9 5 14 5 5 12 31]
root: [29 8 24 24 2 21 8 14 8 8]
PictureElement: {1x10 cell}
g.PictureElement
Columns 1 through 9
[29] [8] [24] [2x1 double] [2x1 double] [2x1 double] [3x1 double] [3x1 double] [5x1 double] [12x1 double]
