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= | =<span style="color:DarkGreen;">Computational biology toolboxes= | ||
{| border="0" cellpadding="5" cellspacing="5" | {| border="0" cellpadding="5" cellspacing="5" | ||
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|width=" | |width="10%"| <imgicon>GPT-logo-460.png|100px|GFtbox</imgicon> | ||
|width=" | |width="30%"| <big>'''GFtbox'''</big> <br>(Matlab: PC, Mac, Linux) | ||
For modelling the growth of shapes from patterns of | For modelling the growth of shapes from patterns of growth factor activity. <br>'''Details'''<br>''Download'' | ||
|width="60%"| An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. | |width="60%"| An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. | ||
|} | |} | ||
{| border="0" cellpadding="5" cellspacing="5" | {| border="0" cellpadding="5" cellspacing="5" | ||
|width=" | |width="10%"| <imgicon>VolViewer.png|100px|VolViewer</imgicon> | ||
|width=" | |width="30%"| <big>'''VolViewer'''</big> <br>(Windows) | ||
For | For viewing and measuring 3D volume images. <br>'''Details'''<br>''Download'' | ||
|width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | |width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | ||
|} | |} | ||
= | =<span style="color:DarkGreen;">Computational biology systems to which we contribute= | ||
{| border="0" cellpadding="5" cellspacing="5" | {| border="0" cellpadding="5" cellspacing="5" | ||
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|width="20%"| <imgicon>BioformatsConverterZip.png| | |width="20%"| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | ||
|width="20%"| <big>'''[[BioformatsConverter]]'''</big> <br>(PC: Windows) | |width="20%"| <big>'''[[BioformatsConverter]]'''</big> <br>(PC: Windows) | ||
For converting microscope manufacturer proprietary file formats. <br>'''Details'''<br>''Download'' | For converting microscope manufacturer proprietary file formats. <br>'''Details'''<br>''Download'' | ||
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|width="20%"| <imgicon>OMERO_DIAGRAM.jpg| | |width="20%"| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | ||
|width="20%"| <big>'''[[OMERO]]'''</big> <br>(Matlab: PC, Mac, Linux) | |width="20%"| <big>'''[[OMERO]]'''</big> <br>(Matlab: PC, Mac, Linux) | ||
For working with the OME image database. <br>'''Details'''<br>''Download'' | For working with the OME image database. <br>'''Details'''<br>''Download'' | ||
Revision as of 12:42, 4 May 2011
Computational biology toolboxes
| <imgicon>GPT-logo-460.png|100px|GFtbox</imgicon> | GFtbox (Matlab: PC, Mac, Linux) For modelling the growth of shapes from patterns of growth factor activity. |
An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
| <imgicon>VolViewer.png|100px|VolViewer</imgicon> | VolViewer (Windows) For viewing and measuring 3D volume images. |
The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
Computational biology systems to which we contribute
| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | BioformatsConverter (PC: Windows) For converting microscope manufacturer proprietary file formats. |
This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. |
| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | OMERO (Matlab: PC, Mac, Linux) For working with the OME image database. |
Open Microscopy Environment Remote Objects. for visualising, managing, and annotating scientific image data. |