Difference between revisions of "Software"
Jump to navigation
Jump to search
Line 1: | Line 1: | ||
=Toolboxes for research= | =Toolboxes for research= | ||
− | {| border=" | + | {| border="0" cellpadding="5" cellspacing="5" |
|- valign="top" | |- valign="top" | ||
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | |width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | ||
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows) | |width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows) | ||
− | For interacting with 3D volume images. <br>Download | + | For interacting with 3D volume images. <br>'''Details'''<br>''Download'' |
|width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | |width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | ||
+ | |||
|- valign="top" | |- valign="top" | ||
− | |width="20%"| <imgicon> | + | |width="20%"| <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon> |
− | |width="20%"| <big>'''[[ | + | |width="20%"| <big>'''[[GFtbox]]'''</big> <br>(Matlab: PC, Mac, Linux) |
− | For | + | For modelling the growth of shapes from patterns of gene activity. <br>'''Details'''<br>''Download'' |
− | |width="60%"| | + | |width="60%"| An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|} | |} | ||
+ | =Packages to which we contribute= | ||
+ | {| border="0" cellpadding="5" cellspacing="5" | ||
+ | |- valign="top" | ||
+ | |width="20%"| <imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> | ||
+ | |width="20%"| <big>'''[[BioformatsConverter]]'''</big> <br>(PC: Windows) | ||
+ | For converting microscope manufacturer proprietary file formats. <br>'''Details'''<br>''Download'' | ||
+ | |width="60%"| This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | ||
− | + | |- valign="top" | |
− | | <imgicon> | + | |width="20%"| <imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon> |
− | + | |width="20%"| <big>'''[[OMERO]]'''</big> <br>(Matlab: PC, Mac, Linux) | |
− | + | For working with the OME image database. <br>'''Details'''<br>''Download'' | |
− | + | |width="60%"| [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects.] for visualising, managing, and annotating scientific image data. | |
− | |||
− | |||
|} | |} | ||
− | |||
− | |||
− | |||
− | |||
=Algorithms, demonstrations and tools= | =Algorithms, demonstrations and tools= |
Revision as of 17:54, 29 April 2011
Toolboxes for research
VolViewer (PC: Windows) For interacting with 3D volume images. |
The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). | |
GFtbox (Matlab: PC, Mac, Linux) For modelling the growth of shapes from patterns of gene activity. |
An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
Packages to which we contribute
BioformatsConverter (PC: Windows) For converting microscope manufacturer proprietary file formats. |
This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | |
OMERO (Matlab: PC, Mac, Linux) For working with the OME image database. |
Open Microscopy Environment Remote Objects. for visualising, managing, and annotating scientific image data. |