Software

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Computational biology toolboxes

GFtbox

<imgicon>GPT_thumbnail.png|80px|GFtbox</imgicon> (PC, Mac, Linux, uses Matlab which is available as a 30 day free trial and there is a student edition)

For modelling the growth of shapes from patterns of growth factor activity.
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Tutorials

An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.

VolViewer

<imgicon>VolViewer-logo.png|80px|VolViewer</imgicon> (PC: Windows, your computer or a server)

For viewing and measuring 3D volume images.
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Written C++ it makes extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME).

Computational biology systems to which we contribute

BioformatsConverter

<imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> (PC: Windows)

For converting microscope manufacturer proprietary file formats.
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This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.

OMERO

<imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> (web client - SQL server)

For working with the OME image database.
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Open Microscopy Environment Remote Objects (OMERO). for visualising, managing, and annotating scientific image data.


Algorithms, demonstrations and tools