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Back to: Antirrhinum Petal Growth Toolbox Models
GFtbox Growth factor naming conventions
Prefix
| id_ |
identity factors (non-diffusible). Identity factors can be labelled as on the A or B side (ida_, idb_)
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| s_ |
signalling factors (diffuse not including polariser)
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| v_ |
visualising labels (e.g. theta, bend, kpar, other labels)
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| f_ |
finite element manipulation (e.g. seams, making holes)
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Suffix
| _p |
promotor: how much the expression of the factor is being promoted in the model
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| _l |
level of morphogen, i.e. *_p times *_a. This gets updated at the end of the interaction function and might change according to growth or mutation, see *_a.
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| _i |
index into the main data structure morphogen field, m.morphogen.
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| _a |
activity: by default it is 1 and if the factor is mutated or silenced then it is 0. However, it can be in the range [0,...,1].
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Standard morphogens
Specifying growth
| kapar_p,kapar_a,kapar_l |
specify growth on the 'A' side parallel to the polariser and in the plane of the tissue
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| kbpar_p,kbpar_a,kbpar_l |
specify growth on the 'B' side parallel to the polariser and in the plane of the tissue
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| kaper_p,kaper_a,kaper_l |
specify growth on the 'A' side perpendicular to the polariser and in the plane of the tissue
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| kbper_p,kbper_a,kbper_l |
specify growth on the 'B' side perpendicular to the polariser and in the plane of the tissue
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| knor_p,knor_a,knor_l] |
specify growth normal to the plane of the tissue (i.e. thickness)
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Controlling growth
| P |
Polariser level.
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| strainret_p,strainret_a,strainret_l |
a number between 0 (no strain retention, default) and 1 (full strain retention).
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| kbpar_p,kbpar_a,kbpar_l |
a number between 0 (no inhibition of growth) and 1 (fully inhibited)
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