VolViewerOMERO: Difference between revisions
Jump to navigation
Jump to search
JeromeAvondo (talk | contribs) No edit summary |
JeromeAvondo (talk | contribs) No edit summary |
||
| Line 16: | Line 16: | ||
*Start by checking out the latest VolViewer source code from the SVN: | *Start by checking out the latest VolViewer source code from the SVN: | ||
** [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer] | ** [https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer VolViewer SVN] | ||
*Next build the OMERO cpp libraries following this guide: | *Next build the OMERO cpp libraries following this guide: | ||
** [http://trac.openmicroscopy.org.uk/ome/wiki/OmeroCpp OMERO cpp libraries] | ** [http://trac.openmicroscopy.org.uk/ome/wiki/OmeroCpp OMERO cpp libraries] | ||
** Note to build the OMERO cpp you will require the [http://www.zeroc.com/download_3_3_1.html ICE libraries]. Note that these exist in binary form for Windows, Mac and Linux. | ** Note to build the OMERO cpp you will require the [http://www.zeroc.com/download_3_3_1.html ICE libraries]. Note that these exist in binary form for Windows, Mac and Linux. | ||
** | ** | ||
Revision as of 10:34, 28 October 2011
Overview
It is possible to build VolViewer with support for reading images directly from an OMERO server. The viewer can read XYZC image stacks with up to 3 channels (C). Minimal metadata such as the image dimensions, physical voxel size and channel min/max threshold values are also supported. Currently the viewer supports the following OMERO data types: uint8, uint16, int8, int16.
For the exact implementation details of the OMERO loader please refer to these files h / cpp from the SVN.
Requirements
To build VolViewer with OMERO support you will require the following:
- An SVN client, to check out the VolViewer source code, such as TortoiseSVN for windows or svn for linux/mac.
- The latest Qt libraries.
- The OMERO cpp libraries.
How To
- Start by checking out the latest VolViewer source code from the SVN:
- Next build the OMERO cpp libraries following this guide:
- OMERO cpp libraries
- Note to build the OMERO cpp you will require the ICE libraries. Note that these exist in binary form for Windows, Mac and Linux.