SpatioTemporalModellingNetwork stemnwiki http://cmpdartsvr3-v.uea.ac.uk/wiki/STEMN/index.php/Main_Page MediaWiki 1.43.8 first-letter Media Special Talk User User talk SpatioTemporalModellingNetwork SpatioTemporalModellingNetwork talk File File talk MediaWiki MediaWiki talk Template Template talk Help Help talk Category Category talk 0 2 2 2009-03-23T13:55:09Z AndrewBangham 2 2 wikitext text/x-wiki =<font color="blue">Spatio-temporal modeling network on plant systems ('''STEMN''')</font>= '''From observation to theory.''' {| border="0" cellpadding="5" cellspacing="3" width="550" |valign="top"| <font color="blue">''Imagine''</font> clicking on a plant and zooming in to any level of detail. Finding links to experimental observations, to theory and above all to computable models of any or all parts of the plant. Watch growth, differentiation, responses to parasites and much more. Well, it's not yet possible. Why do it? Quite apart from educational merits it would provide evidence that all these things are properly understood and that will help society. A worthwhile goal. Try clicking on names: right (and add links to your work) |valign="top"| <imagemap> Image:Web_page_graphic.png|300px|right rect 360 209 443 231 [[Clickon_leaves|Leaves]] rect 352 88 443 115 [[Clickon_flowers|Flowers]] desc bottom-right </imagemap> |} [[Clickon leaves | Leaves]] [[Clickon flowers| Flowers]] [[Clickon reproduction| Reproduction]] [[Clickon clocks| Clocks]] [[Clickon growing meristem| Growing meristem]] [[Clickon Seliques| Seliques]] [[Clickon Energetics| Energetics]] [[Clickon Regulation| Regulation]] [[Clickon Control| Control]] [[Clickon Signalling| Signalling]] [[Clickon Differentiation| Differentiation]] [[Clickon Branching| Branching]] [[Clickon Root| Root]] [[Clickon Defence| Defence]] ==<font color="blue">Prize</font>: learn a technique by visiting a laboratory== [[Image:Happy idea.png|thumb|80px|right]] [[Travel Prize | Travel Prize]] to be won by participants of any of the sponsored workshops. [[Travel Prize | Find out more]]. ==[[Summary of STEMN | Summary of STEMN ]]== ==Links== *[http://garnet.arabidopsis.org.uk/ GARNet] (Genomic Arabidopsis Resource Network) *[http://www.cellsignet.org.uk/ Signet] Cell Signalling Network *[http://www.cpib.info/ CPIB] Centre for Plant Integrative Biology *[http://sites.google.com/a/stompnet.org/stompnet/ SToMP] network is a collaborative research network between mathematical modellers and microbiologists. *[http://www.genesys.ac.uk/ GENESYS] Promote the required integration between genetics, bioinformatics and mathematics to facilitate the reverse-engineering of regulatory networks *[http://www.amsta.leeds.ac.uk/Applied/I2M/ I2M] Immunology, Imaging and Modelling *[http://iplantcollaborative.org/ iPlant] Tackling the 'Grand challenge' of creating a cyberinfrastructure that supports plant biology. *[http://www.computableplant.org/ Computable Plant] An early start on the challenge. *[http://algorithmicbotany.org/ L-systems] a classical work of beauty. *[http://algorithmicbotany.org/virtual_laboratory/ Virtual Laboratory software] plant modelling software. *[http://www-sop.inria.fr/virtualplants/wiki/doku.php?id=software:plantgl:roadmap Virtual Plants] OpenAlea for plant modelling and analysis. Software toolkit V-Plants, dedicated to the modeling and analysis of plant development at different scales. *[http://sbml.org/Main_Page Systems Biology Markup Language] computer-readable format for representing models of biochemical reaction networks in software (note spatio-temporal aspects not yet developed). *[http://fizz.cmp.uea.ac.uk/wiki/DArT_Toolshed/index.php/%22Visualising_Plant_Development_and_Gene_Expression_in_3D_using_Optical_Projection_Tomography%22 3D viewer that uses graphics card accelerator - good for OPT and confocal images] Visualising Plant Development and Gene Expression in 3D using Optical Projection Tomography *[http://fizz.cmp.uea.ac.uk/wiki/DArT_Toolshed/index.php/Main_Page PCA analysis of shapes] Shape model toolbox for analysing 2D shapes (contact Andrew Bangham if you want 3D, stereo or haptics). ==Programme== Year [[2008]] [[2009]] [[2010]] ==Using the Wiki== Why not start by consulting the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software. Or consult the sites [[Wikisyntax|Wiki Syntax]] page for information on using the wiki syntax. ==Contacts and acknowledgements== * [[ContactsList|Contacts]] * Sponsored by the BBSRC, UK * The logo (top left) is a reference to [http://www-gap.dcs.st-and.ac.uk/~history/Mathematicians/Thompson_D%27Arcy.html D'Arcy Thompson 'On Growth and Form' 1917] 83zdjbtxjtwl6ol0mcke8qg9ipt8vsw