VolViewer commands by function: Difference between revisions
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[http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAPI] | [http://dmbi.nbi.bbsrc.ac.uk/index.php/VolViewerScriptsAPI Full list of VolViewerScriptsAPI] | ||
=Selection of VolViewer commands= | =Selection of VolViewer commands= | ||
The Matlab 'VolViewer' class library provides ''commandsVOL'' which will pass commands to VolViewer, e.g. in Matlab<br> | |||
VO=commandsVOL(VO,'set_clear_all_MSR()') | |||
VO is a VolViewer object created by Matlab when it launches VolViewer with<br> | |||
VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64') | |||
where 'D:\VolViewer_x64' is the path to both VolViewer itself and the location of a 'WatchFile.txt' into which commands are written. | |||
{| border="0" cellpadding="1" cellspacing="1" | {| border="0" cellpadding="1" cellspacing="1" | ||
|width="100pt"| '''Image'''||open_image_stack(int channel, 'somepath\slice000.png') directory of image slices | |width="100pt"| '''Image'''||open_image_stack(int channel, 'somepath\slice000.png') 0 all, 1 red, 2 green, 3 blue, directory of image slices | ||
|- | |- | ||
| ||save_image_stack('somepath') | | ||save_image_stack('somepath') | ||
| Line 14: | Line 19: | ||
|- | |- | ||
| ||save_omero_image('name', 'description') (in preparation) | | ||save_omero_image('name', 'description') (in preparation) | ||
|- | |||
| ||-------- | |||
|- | |- | ||
| width="100pt"| '''Objects'''||open_msr('somepath\file.msr') points, lines and facets placed around images | | width="100pt"| '''Objects'''||open_msr('somepath\file.msr') points, lines and facets placed around images | ||
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|- | |- | ||
| ||save_tfn('somepath\file.tfn') | | ||save_tfn('somepath\file.tfn') | ||
} | } | ||
Revision as of 17:48, 1 March 2012
Return to VolViewer Scripting in more detail
Full list of VolViewerScriptsAPI
Selection of VolViewer commands
The Matlab 'VolViewer' class library provides commandsVOL which will pass commands to VolViewer, e.g. in Matlab
VO=commandsVOL(VO,'set_clear_all_MSR()')
VO is a VolViewer object created by Matlab when it launches VolViewer with
VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64')
where 'D:\VolViewer_x64' is the path to both VolViewer itself and the location of a 'WatchFile.txt' into which commands are written.
| Image | open_image_stack(int channel, 'somepath\slice000.png') 0 all, 1 red, 2 green, 3 blue, directory of image slices |
| save_image_stack('somepath') | |
| open_image_raw(int channel, 'somepath\myfile.raw') | |
| save_image_raw('somepath\file.dat') | |
| open_omero_image('imageid') (in preparation) | |
| save_omero_image('name', 'description') (in preparation) | |
| -------- | |
| Objects | open_msr('somepath\file.msr') points, lines and facets placed around images |
| save_msr('somepath\file.msr') | |
| open_slc('somepath\file.slc') clipping planes | |
| save_tfn('somepath\file.slc') | |
| open_tfn('somepath\file.tfn')') transfer function, i.e. brightness/contrast/thresholds | |
| save_tfn('somepath\file.tfn')
} |